Sequence
atgc intronic sequence ATGC exonic sequence...catgttaaatgcttgactggaagccaatgacttcaccttacttttgtcagtcattatcatctatcttgtctttttgtgtaataccaatctcagttttcagGTTGGTTTCCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGTGGTTGCCATTTCAGCCATAATTGCTGGTGGACGATTG
Basic information
species | Glycine max |
transcript | GLYMA07G08030.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G08030.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 9
catgttaaatgcttgactggaagccaatgacttcaccttacttttgtcagtcattatcatctatcttgtctttttgtgt--aataccaatctcagttttcagGTTGGTTTCCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGTGGTTGCCATTTCAGCCATAATTGCTGGTGGACGATTG
| ||| || ||| | | |||| | ||| |||| | |||| || | | ||| || | | | | | ||||||| |||| || ||||||||||||||||||||||| || ||||| || || |||| || || ||| | || |||||||||||||| || |
ctggttgaa--attgctggtatgccagatatttctatatactcaaggaagtctaggaaatatcagtggtcgcaaaatgctaagtttctactgctcttttcagATTGGATTTCAAGCCATTGCTGAAGCTCTTGGGCTTGCTGCAGTCAAAGCAGCAGTGGCTATTACTGCAATAATTGCTGGTGGCCGTCTA
upper sequence: GLYMA07G08030.1 (Glycine max), 3'ss of exon 8
lower sequence: AT4G00630.2 (Arabidopsis thaliana), 3'ss of exon 8
catgttaaatgcttgactggaagccaatgactt-caccttacttttgtcagtcattatcatctatcttgtcttt------ttgtgtaataccaatctcagttttcagGTTGGTTTCCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGTGGTTGCCATTTCAGCCATAATTGCTGGTGGACGATTG
||| | || | || ||| || || || | || | ||| | ||| |||| | | | | || | || |||| |||| || ||||||||||||||||||||||| || ||||| | || |||| ||||| || | | ||||||||||||||| || |
-----ctcatgtgttgctaatatttgctgtcttgcatatttctcaaggaagcc--tataaattattttgtaagaggagaatgctaagttgctaactacttttctcagATTGGATTTCAAGCCATTGCTGAAGCTCTTGGACTAGCTGCAATCAAAGCAGCAGTTGCTATCACTGGCATAATTGCTGGTGGCCGTCTC
upper sequence: GLYMA07G08030.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 7
catgttaaatgc-ttgactggaagccaatgacttcacct--tacttttgtcagtcattatcatctatcttgtctttttgt-gtaataccaatctcagttttcagGTTGGTTTCCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGTGGTTGCCATTTCAGCCATAATTGCTGGTGGACGATTG
| | |||| |||| | || ||| | ||| | | | | |||| | || || | | | |||| || |||||||| ||||||| |||||||||||||||||||| || |||||||||||||||||| | ||||||||| | |||||||||||||||||||| |||
--ttctccatgcgttgatcatgcttctttgttgtcagttgtcactactatta-ctgctgcttctattcttatgttgttatcatggcaacaat-tctgttttcagATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcagtcattatcatctatcttgtctttttgtgtaataccaatctcagttttcagGTTGGTTTCCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGTGGTTGCCATTTCAGCCATAATTGCTGGTGGACGATTG
ttttc CT-rich tract
attatcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catgttaaatgcttgactggaagccaatgacttcaccttacttttgtcagtcattatcatctatcttgtctttttgtgtaataccaatctcagttttcagGTTGGTTTCCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGTGGTTGCCATTTCAGCCATAATTGCTGGTGGACGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
catgtta
- - - - -tgcttga
- - - - - - - - - - - -ccaatga
- - - - - - - - - - - - - - - cttcacc