1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaatgcttgaatctatctgaaaatttctgctattgctttttagtttttagactgaagttctagtgttgatttaacaaagatacctttgttttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGAGAAATCTTGAGGTGAGGCGAGTTGCATGTTTCACATTAATTGTTAGGT
species | Glycine max |
transcript | GLYMA07G06230.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGEST: gi|207820415|gb|GD792869.1|GD792869
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGEST: gi|193385173|gb|FK352327.1|FK352327
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGACTTCTTTGTTAATTCTGAGCCCCCGTGCTCTCAATCAGATGAGGEST: gi|208242168|gb|GE042370.1|GE042370
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGEST: gi|193415372|gb|FK380192.1|FK380192
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGGCTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGEST: gi|12689880|gb|BG156216.1|BG156216
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGEST: gi|208108701|gb|GD907133.1|GD907133
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGEST: gi|208260386|gb|GE058512.1|GE058512
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: GCCATCTGATTCAGACA-TTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGEST: gi|207719843|gb|GD701698.1|GD701698
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGEST: gi|6913615|gb|AW395145.1|AW395145
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGEST: gi|7796003|gb|AW781400.1|AW781400
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGEST: gi|193314343|gb|FK280144.1|FK280144
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG TGGATGACTTCTTTGTTAATTCTGAGC
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGC
tttagactgaagttctagtgttgatttaacaaagatacctttgttttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGAGAAATCTTGAGGTGAGGCGAGTTGCATGTTTCACATTAATTGTTAGGT
atttaac putative branch site (score: 3)
cctttgttttcatttc putative PPT
atttaacaaagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgcttgaatctatctgaaaatttctgctattgctttttagtttttagactgaagttctagtgttgatttaacaaagatacctttgttttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGAGAAATCTTGAGGTGAGGCGAGTTGCATGTTTCACATTAATTGTTAGGT
- -tgcttga
- - - - - - ctatctg
- - - - - - - - - - - - ttctgct
- - - - - - - - - - - - - - - - -tgctttt
- - - - - - - - - - - - - - - - - - - - - - - - -gactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat