Sequence
atgc intronic sequence ATGC exonic sequencegtaacatttttttctgagaagaaataatccaactctgaatgaatcacaaatcagttaaagtaattattgaacattctgggtgcagGCTTGGTCATTATACTGTTCCTAGGGAGATGGATGAGGTCTCCAATTGGCTTAGCTCAAGGCTGGGGCTAGGGGGATCCACATGAATAACAGAGTATAAG
Basic information
species | Glycine max |
transcript | GLYMA07G03670.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G03670.2 (Glycine max), 3'ss of exon 8
lower sequence: AT1G52700.1 (Arabidopsis thaliana), 3'ss of exon 8
---gtaacatttttttctgagaagaaataatccaactctga----atgaatcacaaatcagttaaagtaattattgaacat---tctgggtgcagGCTTGGTCATTATACTGTTCCTAGGGAGATGGATGAGGTCTCCAATTGGCTTAGCTCAAGGCTGGGGCTAGGGGGATCCACATGAATAACAGAGTATAAG
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gtaataaaacttcaatgaacgcgaaaataatttgatttaattatcatttgttggaacatacttataaagagttttgggtttatgccaacgtgcagACTTGGTCATTATACCGTTCCCAGAGAAATGGATGAGGTCGTTCACTGGCTCACAACGATGCTCGGACTTGAGGGCTCGCGCTAAACTTTACAGACTGCG
upper sequence: GLYMA07G03670.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0002g06010.t01 (Vitis vinifera), 3'ss of exon 9
--------gtaacatttttttctgagaagaaataatccaactctgaatgaatcacaaatc--agttaaagtaattattgaacattctgg------gtgcagGCTTGGTCATTATACTGTTCCTAGGGAGATGGATGAGGTCTCCAATTGGCTTAGCTCAAGGCTGGGGCTAGGGGGAT-CCACATG-AATAACAGAGTATAAG
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gtatctaattgacttcctccattggcaagatctaa-cttgctttga-tgattggtaaattgaagatgaagtgttttctaaatgtttggtttgaccgtgcagACTTGGTCATTATACAGTTCCCAAAGAGATGGATGAGGTCTGCACTTGGCTAACTGCAAGGCTGGGGCTTGAGGGGTGCCACTCATAATCACA-ATTATGA-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192328051|gb|FK021797.1|FK021797EST: TCCTTAAGTTCAGCTGGGTTTCGATACATTACATTCAAATCCTATGATGG GCTTGGTCATTATACTGTTCCTAGGGAGATGGATGAGGTCTCCAATTGGCT
genomic: TCCTTAAGTTCAGCAGGGTTTCGATACATTACATTCAAATCCTATGATGGgtaacatttt ... ctgggtgcagGCTTGGTCATTATACTGTTCCTAGGGAGATGGATGAGGTCTCCAATTGGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactctgaatgaatcacaaatcagttaaagtaattattgaacattctgggtgcagGCTTGGTCATTATACTGTTCCTAGGGAGATGGATGAGGTCTCCAATTGGCTTAGCTCAAGGCTGGGGCTAGGGGGATCCACATGAATAACAGAGTATAAG
aaatcagttaaagtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacatttttttctgagaagaaataatccaactctgaatgaatcacaaatcagttaaagtaattattgaacattctgggtgcagGCTTGGTCATTATACTGTTCCTAGGGAGATGGATGAGGTCTCCAATTGGCTTAGCTCAAGGCTGGGGCTAGGGGGATCCACATGAATAACAGAGTATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA