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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgacactgccacatgtcttcttatgacaaacaccatatgtgcctagttcttgaacatcatatatcatttttgctggaaagtgtgctaataaaatcattgatgataatttcttatatgggccacacacagAATGTCTTGGGCAAATGGAGCTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGACAATACGTCA

Basic information

species Glycine max
transcript GLYMA07G02680.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02680.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G80830.1 (Arabidopsis thaliana), 3'ss of exon 8
gtacgtgacactgccacatgtcttcttatgacaaacaccatatgtgcctagttcttgaacatcatatatcatttttgctggaaagtgtgctaataaaatcattgatgataatttcttatatgggccacacacagAATGTCTTGGGCAAATGGAGCTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGACAATACGTCA
                                                        | | ||  | |    |  ||| ||    || |  |    | | |||| | |  |  |  ||     |    || |||||| ||  |||| |||||||||||||| ||||||||||| ||  | ||||| || ||||| || || || ||||| ||||| ||||| |||||||| || |
--------------------------------------------------------gtaaattgtttgct-tccttgttgttctgtttcttttccataacatttaagtgatgtctttcctctgttttcaaacagAACGTTGTGGGAAAATGGAGCTCAAAGCTATTTGCAATCGCGCTTCTTGCTTCTGGTCAGAGCTCGACGATAACCGGAACTTATGCTGGACAATATGTAA

upper sequence: GLYMA07G02680.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G15960.1 (Arabidopsis thaliana), 3'ss of exon 9
gtacgtgacactgccacatgtcttcttatgacaaacaccatatgtgcctagttcttgaacatcatatatcatttttgctggaaagtgtgctaataaaatcattgatgataatttcttatatgggcca-cacacagAATGTCTTGGGCAAATGGAGCTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGACAATACGTCA
                                        ||  | | |   || |  |  |  |   ||| |||       || |   |  || |    |      |||  | |||||   ||    | ||||||| ||  |||| |||||||||||||| |||||||||||||| || ||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||| |
---------------------------------------gtaaatccatgaatcctatatcttttgcttcaatttcttgcataacttctcacattattagaggatctatatatacttattctggttgtctcacagAACGTTGTGGGTAAATGGAGCTCAAAGCTATTTGCAATTGCGTTGCTTGCTTCCGGTCAGAGTTCAACCATAACCGGAACATATGCTGGACAATACGTTA

upper sequence: GLYMA07G02680.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 10
-------------------------------------------gtacgtgacactgccacatgtcttct--------tatgacaaacaccatat-gtgcctagttcttgaacatcatatatcatttttgctggaaagtgtgctaataaaatcattgatgataatttcttatatgg-gccacacacagAATGTCTTGGGCAAATGGAGCTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGACAATACGTCA
                                            | | | |  ||  ||  |  |||||        | ||  |||  |||| |     |  | |  |    ||  | |  | ||||     |||      ||    | ||  || |||||| ||  | || ||    ||    |||||||| || ||||||||||||||||| || ||||| |||||||| || || || ||||| |||||||| || || |||||||||||||| ||||| || |
gtatgtctctgtagttgtagcaacatgggcatttattgttatcatccttcaatctctcatttagcttctaaccagattgtgctaaaatccatttcaaatcaggattcttggtatggttttgccttttcttctgaaccca-actgtccagatttttcatgata-ttgttaatttgttatcatttgcagAATGTATTAGGCAAATGGAGCTCAAAGCTTTTTGCTATTGCTTTGCTAGCATCTGGTCAGAGTTCTACGATCACGGGAACATATGCAGGGCAATATGTAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402052|gb|EV271865.1|EV271865
EST:     AGAATAGCTGTCAGGATTTGGATTTGAACAAGGCCTCCTTTTTATTAAGA                         AATGTCTTGGGCAAATGGAGCTCAAAACTATTTGCAATTGCTTTACTTGCC
genomic: AGAATAGCTGTCAGGATTTGGATTTGAACAAGGCCTCCTTTTTATTAAGAgtacgtgaca ... ccacacacagAATGTCTTGGGCAAATGGAGCTCAAAACTATTTGCAATTGCTTTACTTGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaagtgtgctaataaaatcattgatgataatttcttatatgggccacacacagAATGTCTTGGGCAAATGGAGCTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGACAATACGTCA
           taataaaatcattgat  TA-rich tract