1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaaagtataatgcgaggctgcatttctcatttgaagtcaaaaagcttggagagagaagtgaatttactaatacttttttttcttttttttttccatctagCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG
species | Glycine max |
transcript | GLYMA07G02120.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAG CTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGEST: gi|209722358|gb|BW665844.1|BW665844
genomic: G-TACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGgtatgcttgc ... ttccatctagCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG
EST: TGAGGACCCCGGTCAG CTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGEST: gi|13312684|gb|BG406335.1|BG406335
genomic: TGAGGACCCCGGTCAGgtatgcttgc ... ttccatctagCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG
EST: GGTACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAG CTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG
genomic: G-TACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGgtatgcttgc ... ttccatctagCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG
ttggagagagaagtgaatttactaatacttttttttcttttttttttccatctagCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG
tactaat putative branch site (score: 1)
tttactaatacttttt CT-rich tract
aagtgaatttactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagtataatgcgaggctgcatttctcatttgaagtcaaaaagcttggagagagaagtgaatttactaatacttttttttcttttttttttccatctagCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT