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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttaattttatttgtttcatcaatatttatttatttgtatttaactttttaattaagcatgttcattctattgttagCCATGGAGTGTGCCAGAAGTGCTACGTCCACTGTACGAGTCATCAACGGTACTGGCTCAGAAGACATCTATCGTG

Basic information

species Glycine max
transcript GLYMA07G01950.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01950.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------------------------------------------------------gtacgttaattttatttgtttcatcaatatttatttatttgtatttaactttttaattaagcatgttcattctat-tgttagCCATGGAGTGTGCCAGAAGTGCTACGTCCACTGTACGAGTCATCAACGGTACTGGCTCAGAAGACATCTATCGTG
                                                                               | |||   | || ||| ||    || ||||   |||    |  |   |  | | || | ||||||||||  || |  ||||||||||||||||| |||||| | ||||| ||||| || |||||||| || || ||||| || ||| | || | |
gtaagaaacctcatccttatttttatgtagttttttattagttgatacacaaatgttaaccttatatgtttagttcatcatgtttcctgtacttgattatgaaacatttgactatcaaaaactggatgatgactttatcatgttcatttcatctcctagCCATGGAGTGTGCCTGAAGTGTTGCGTCCTCTGTATGAATCATCAACAGTGCTTGCTCAAAAAACAACAATGGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398017|gb|EV267895.1|EV267895
EST:     GTGAAGGAGGCGGTTCCATCATCCACATTGTTGATCATATGAATTTAGAG                         CCATGGAGTGTGCCAGAAGTGCTACGTCCACTGTACGAGTCATCAACGGTA
genomic: GTGAAGGAGGCGGTTCCATCATCCACATTGTTGATCATATGAATTTAGAGgtacgttaat ... ctattgttagCCATGGAGTGTGCCAGAAGTGCTACGTCCACTGTACGAGTCATCAACGGTA
EST: gi|37997336|gb|CF808925.1|CF808925
EST:     GTGAAGGAGGCGGTTCCATCATCCACATTGTTGATCATATGAATTTAGAG                         CCATGGAGTGTGCCAGAAGTGCTACGTCCACTGTACGAGTCATCAACGGTA
genomic: GTGAAGGAGGCGGTTCCATCATCCACATTGTTGATCATATGAATTTAGAGgtacgttaat ... ctattgttagCCATGGAGTGTGCCAGAAGTGCTACGTCCACTGTACGAGTCATCAACGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttatttatttgtatttaactttttaattaagcatgttcattctattgttagCCATGGAGTGTGCCAGAAGTGCTACGTCCACTGTACGAGTCATCAACGGTACTGGCTCAGAAGACATCTATCGTG
                        ttttaat  putative branch site (score: 3)
                                       ttcattct  putative PPT
     tatttatttgtattta  TA-rich tract