Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattaatttgaattgttgcatcaaaatatataatattttttgtttttgtatttaacttcaaaattaagcgtgtttatactattgttagCCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCG

Basic information

species Glycine max
transcript GLYMA07G01940.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01940.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------------------------gtacattaatttgaattgttgcat-caaaatatataatattttttgtttttg---------tatttaact-tcaaaa-------------ttaagcgtgtttatactat-tgttagCCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCG
                                             ||||  ||| | ||   ||  ||    | |  || || |||  |||  |||          |||| ||| ||||||             || | | |||| ||   || |  ||||||||||||||||| || ||| | ||||| ||||| |||||||||||||| || ||||| || ||||| ||||||
gtaagaaacctcatccttatttttatgtagttttttattagttgatacacaaatgttaacc-ttatatgtttagttcatcatgtttcctgtacttgattatgaaacatttgactatcaaaaactggatgatgactttatcatgttcatttcatctcctagCCATGGAGTGTGCCTGAAGTGTTGCGTCCTCTGTATGAATCATCAACAGTGCTTGCTCAAAAAACAACAATGGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19268757|gb|BM885013.1|BM885013
EST:     GTGAAGGAGGTGGTTCGATCATCCACATTGTTGATCATATGGATTTAGAG                         CCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTA
genomic: GTGAAGGAGGTGGTTCGATCATCCACATTGTTGATCATATGGATTTAGAGgtacattaat ... ctattgttagCCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTA
EST: gi|9985955|gb|BE659961.1|BE659961
EST:     GTGAAGGAGGTGGTTCGATCATCCACATTGTTGATCATATGGATTTAGAG                         CCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTA
genomic: GTGAAGGAGGTGGTTCGATCATCCACATTGTTGATCATATGGATTTAGAGgtacattaat ... ctattgttagCCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTA
EST: gi|16348853|gb|BI974448.1|BI974448
EST:     GTGAAGGAGGTGGTTCGATCATCCACATTGTTGATCATATGGATTTAGAG                         CCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTA
genomic: GTGAAGGAGGTGGTTCGATCATCCACATTGTTGATCATATGGATTTAGAGgtacattaat ... ctattgttagCCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTA
EST: gi|9985954|gb|BE659960.1|BE659960
EST:     GTGAAGGAGGTGGTTCGATCATCCACATTGTTGATCATATGGATTTAGAG                         CCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTA
genomic: GTGAAGGAGGTGGTTCGATCATCCACATTGTTGATCATATGGATTTAGAGgtacattaat ... ctattgttagCCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttttgtttttgtatttaacttcaaaattaagcgtgtttatactattgttagCCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCG
                atttaac  putative branch site (score: 3)
     tttgtttttgtattta  TA-rich tract