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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaattcttgtcttattttcctttgattgagtccttagtcttaacaaaggttacatattatttgatatgaatgatagattaaatattgaagcttctttgatatatgatatgactctagGCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTGACTGAGTATGATTGTGCATTAGATGCCGAGAGTTTAAATCCTAGTGATCAG

Basic information

species Glycine max
transcript GLYMA07G01790.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01790.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os05g45590.1 (Oryza sativa), 3'ss of exon 5
gtgagcaattcttgtcttattttcctttgattgagtccttagtcttaacaaaggttacatatt-atttgat--atgaatgatagattaaatattgaagcttctttgatatatgatatgactctagGCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTGACTGAGTATGATTGTGCATTAGATGCCGAGAGTTTAAATCCTAGTGATCAG
                        | |||  ||     ||||  | |   |    | ||| || | || ||  || |    |||||    |   |     || |     | ||   || | | |||  || || ||||| ||||| |||||| ||||||| || ||||| |||||||| | ||||   ||||||||||| || ||||| |||||| |||| |||
------------------------cattgtctgtactgttagcatgagtcacttgtgcatgtttagttcatccataagctttagatggttttcagggttctcatcagcgtttgtgctgtcac-agGTAATAAATATGGAATGGGGGAACTTCAGGTCATCCCATCTTCCTTTGACTGAATTTGATCAAGCATTAGATGCTGAAAGTTTGAATCCTGGTGAACAG

upper sequence: GLYMA07G01790.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0002g03390.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------------------------gtgagcaattcttgtcttattttcctttgattgagtccttagtcttaacaaaggttacatattatttgatatgaa-----tgat--agattaaatattgaagcttctttgatatatgatatgactctagGCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTGACTGAGTATGATTGTGCATTAGATGCCGAGAGTTTAAATCCTAGTGATCAG
                                            ||  ||  |  | ||||  |||| | |   ||| |      | | |  |||   |   ||   ||||| |||||     ||||  ||||  |  ||||||||  || |||||| |       || |||| |||||||||||||||||| |||||  |||||||||| || ||||| || ||||||||  ||||| | |||   || |||||||| ||| |||| |||
gttagcaattctttagtttctattgtttacttatttgattctgatggtcagatgctatctttctttcttcttcatgattgtgatatgtaagtaaaatgttagtagggtttgaaatgaaatttatgattgagatgtataattgaagcacctctgatatcttg-----ctgtagGTTATCAACATGGAGTGGGGCAACTTTAGGTCATCACATCTACCATTAACAGAGTATGACCGTGCAATGGATATTGATAGTTTAAACCCTGGTGAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatgaatgatagattaaatattgaagcttctttgatatatgatatgactctagGCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTGACTGAGTATGATTGTGCATTAGATGCCGAGAGTTTAAATCCTAGTGATCAG
                               ctttgat  putative branch site (score: 5)
      aatgatagattaaata  TA-rich tract