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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaaatgattttctttgtttttattgaattgaattattaaagctctttgacttgttgcttctaacttgccctactttgttgcacagAGGGGTAAGGTACCATGAACCTGAGTACTGGAAGTTTGGAGAGGCTGGAAACAGATACTTCCGTCATGCCACAGGACAGTTGTATGCCATTTCAAACGAT

Basic information

species Glycine max
transcript GLYMA06G46230.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G46230.2 (Glycine max), 3'ss of exon 8
lower sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgagaaaatgattttctttgtttttattgaattgaattattaaagctctttgacttgttgcttctaacttgccctac-tttgttgcacagAGGGGTAAGGTACCATGAACCTGAGTACTGGAAGTTTGGAGAGGCTGGAAACAGATACTTCCGTCATGCCACAGGACAGTTGTATGCCATTTCAAACGAT
        || ||    ||| | |   ||   ||   || || || ||||||  |   ||  || |||||  |  |   | | | |  |||||| || || |||||||| |||||||| ||||| ||||| |||  ||||||||  ||||||||||| || || |||||||| || |||||||| |  || 
------gtataatcccatttctctcacttaccttc--tttttgaatctctttctcagttttgttttaactcacattttgtctatggagcagAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGAC

upper sequence: GLYMA06G46230.2 (Glycine max), 3'ss of exon 8
lower sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 8
gtgagaaaatgattttctttgtttttattgaattgaattattaaagctctttgacttgttgcttctaacttgccctactttgttgcacagAGGGGTAAGGTACCATGAACCTGAGTACTGGAAGTTTGGAGAGGCTGGAAACAGATACTTCCGTCATGCCACAGGACAGTTGTATGCCATTTCAAACGAT
    | |||  || |||    ||  |  |  ||      || ||     ||||  || ||| |   |     |  |  ||| | |  ||||||||| ||||||||||| || ||||||||||||||||| ||   ||| |||| ||||||||||||||| || |||||||| || ||||||||||  || 
----gtaaagcatcttccagtttcctccttcat------atcaa----ttttgtattcttgtt--aagtcatctttgttttatggagcagAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGAC

upper sequence: GLYMA06G46230.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv12s0059g00640.t01 (Vitis vinifera), 3'ss of exon 8
gtgagaaaatgattttctttgtttttattgaattgaattattaaagctctttgacttgttgcttctaacttgccctactttgttgcacagAGGGGTAAGGTACCATGAACCTGAGTACTGGAAGTTTGGAGAGGCTGGAAACAGATACTTCCGTCATGCCACAGGACAGTTGTATGCCATTTCAAACGAT
    | || ||| |||||||      ||||  |||  |   | || || |||   |  | | |||| | ||| ||   ||| |   |||| || || || ||||||||||| ||||| ||||| ||||| ||||| ||||||| ||| |||||||| || ||||||||| | |||||||||||||| |||
----gtaagtgactttctttag----attgttttggttacgtgaaactgtttagttcttagtttcttatttgtccatatttttgtaacagGGGAGTGAGATACCATGAACCCGAGTATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattattaaagctctttgacttgttgcttctaacttgccctactttgttgcacagAGGGGTAAGGTACCATGAACCTGAGTACTGGAAGTTTGGAGAGGCTGGAAACAGATACTTCCGTCATGCCACAGGACAGTTGTATGCCATTTCAAACGAT
                           ttctaac  putative branch site (score: 1)
                                     ccctacttt  putative PPT
     ttaaa  TA-rich tract