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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatgcctgatcttttaggttggtgcttacctgtgctacttcagttgatgaactaaactctttgtaatacatttttgttagGTTGAAGATCTGGATATGTTGAGTGGACATGTTGACAAAACAAATTTTAAAAGGACTTGCCTATATCTCACCAGTTCTGCAAG

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 3'ss of exon 8
gtaatatgcctgatcttttaggttggt-gcttacctgtgctacttcagttgatgaactaaactctttgtaatacatttttgttagGTTGAAGATCTGGATATGTTGAGTGGACATGTTGACAAAACAAATTTTAAAAGGACTTGCCTATATCTCACCAGTTCTGCAAG
    |||   ||   | |||  ||  | |||   || || |  || | ||||  ||  | | |   | |  || |      |||||||||||| || ||| | |||   |  ||||| ||||||||||||   |||||||| |||||||| ||||||||||| || ||
---gtatttatgtagtattattttctttgctctgctttgttcattaacttgaaaaaacataattgatctctta-acaaactttagGTTGAAGACCTCGATCTATTGGTGGAGCATGTGGACAAAACAAATCACAAAAGGACATGCCTATACCTCACCAGTTCAGCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193712443|gb|FK650166.1|FK650166
EST:     CATAATGCAGAACCTGAAGCTGTTGATCTTTTGATGGAG                         GTTGAAGATCTGGATATGTTGAGTGGACATGTTGACAAAACAAATTTTAAA
genomic: CATAATGCAGAACCTGAAGCTGTTGATCTTTTGATGGAGgtaatatgcc ... tttttgttagGTTGAAGATCTGGATATGTTGAGTGGACATGTTGACAAAACAAATTTTAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacctgtgctacttcagttgatgaactaaactctttgtaatacatttttgttagGTTGAAGATCTGGATATGTTGAGTGGACATGTTGACAAAACAAATTTTAAAAGGACTTGCCTATATCTCACCAGTTCTGCAAG
                        aactaaa  putative branch site (score: 2)
                                             tttttgtt  putative PPT
                                  tttgtaatacattttt  TA-rich tract