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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattactattatactgggtttgatagagaatgtgtcattggcctcactagggttctattattgcatgaaatagGAATGCCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACA

Basic information

species Glycine max
transcript GLYMA06G43840.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996941|gb|CF808530.1|CF808530
EST:     CTAGTGCTTACAAGGCTACTTTAACTTGGAATAATATGCGAACTCTCCAG                         GAATGCCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTT
genomic: CTAGTGCTTACAAGGCTACTTTAACTTGGAATAATATGCGAACTCTCCAGgtaagtatta ... catgaaatagGAATGCCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTT
EST: gi|12774606|gb|BG239533.1|BG239533
EST:     CTAGTGCTTACAAGGCTACTTTAACTTGGAATAATATGCGAACTCTCCAG                         GAATGCCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTT
genomic: CTAGTGCTTACAAGGCTACTTTAACTTGGAATAATATGCGAACTCTCCAGgtaagtatta ... catgaaatagGAATGCCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgatagagaatgtgtcattggcctcactagggttctattattgcatgaaatagGAATGCCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACA
                      gcctcac  putative branch site (score: 3)
                                  ttctattatt  TA-rich tract