1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagaaacatttctctttcctttggagtcacaactatttatcttgcaatttatttccttattttctttccttgctttaatgctgaatattgtaaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCAAAACGAAAGCCAAGTGGAGGAATTGAATCACTTCGTGCAATCCCTTGGA
species | Glycine max |
transcript | GLYMA06G43050.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCGTTTCGTTGAGTACTTCCGATGT GCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCAEST: gi|11689391|gb|BF597067.1|BF597067
genomic: CCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGT GCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCAEST: gi|17020614|gb|BM091648.1|BM091648
genomic: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: CCGTTTCGTTGAGTACTTCCGATGT GCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCAEST: gi|298183910|gb|HO029123.1|HO029123
genomic: CCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGT GCGACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCAEST: gi|15204600|gb|BI427368.1|BI427368
genomic: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGT GCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCAEST: gi|151404929|gb|EV274743.1|EV274743
genomic: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGT GCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCAEST: gi|21255811|gb|BQ452699.1|BQ452699
genomic: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGT GCGACACCTGAGCTGGAGTATGGAAGAATG
genomic: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATG
aatttatttccttattttctttccttgctttaatgctgaatattgtaaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCAAAACGAAAGCCAAGTGGAGGAATTGAATCACTTCGTGCAATCCCTTGGA
ctttaat putative branch site (score: 4)
ttattttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaaacatttctctttcctttggagtcacaactatttatcttgcaatttatttccttattttctttccttgctttaatgctgaatattgtaaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCAAAACGAAAGCCAAGTGGAGGAATTGAATCACTTCGTGCAATCCCTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
aagaaaca
- - - - - - - - tcctttg
- - - - - - - - - - - - - - - - - - - - cttgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa