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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcgctgaaccaaagtatttgttgataatattaaaataataataataaaaatttgacaccttaatattcttcatattaacagGAATTAAAAGGGAACATTCGTGTATTTTGTCGTGTGAGGCCTTTATTAGCTGATGAAAGTTGTAGCACAGAAGGCAGGATTTTCAGTTATCCAACATCAA

Basic information

species Glycine max
transcript GLYMA06G41600.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282932|gb|BE020493.1|BE020493
EST:     AACTTATAGAAGGGGAGAGGCTGCGGAAAAAATTACATAATACCATTTTG                         GAATTAANAGGGAACATTCGTGTATTNTGTCGTGTGAAGCCTTTATTAACT
genomic: AACTTATAGAAGGGGAGAGGCTGCGGAAAAAATTACATAATACCATTTTGgtaattcgct ... atattaacagGAATTAAAAGGGAACATTCGTGTATTTTGTCGTGTGAGGCCTTTATTAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattaaaataataataataaaaatttgacaccttaatattcttcatattaacagGAATTAAAAGGGAACATTCGTGTATTTTGTCGTGTGAGGCCTTTATTAGCTGATGAAAGTTGTAGCACAGAAGGCAGGATTTTCAGTTATCCAACATCAA
                               ccttaat  putative branch site (score: 4)
 ttcttcat  CT-rich tract
 aaaataataataataa  TA-rich tract