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gtaactaaataatttagcaaaactaatgtgaaaaaaatgatggtaaagaaggagtcattgctgctctttgttgaatttaaatttgacaaatttagctcttcagGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTTTTGATGATGTTCCAGAAGCTCTAGAAAAGTGGCATACCTTGGGCATAA
species | Glycine max |
transcript | GLYMA06G36620.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAAGAATTGCAG GGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTEST: gi|23052905|gb|BU577396.1|BU577396
genomic: GAAAGAATTGCAGgtaactaaat ... agctcttcagGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTT
EST: AAGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTGAAAGAATTGCAG GGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTEST: gi|31312347|gb|CD397550.1|CD397550
genomic: AAGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTGAAAGAATTGCAGgtaactaaat ... agctcttcagGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTT
EST: ATAGAAAGATCACTGCCTTGAAAGAATTGCAG GGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTT
genomic: ATAGAAAGATCACTGCCTTGAAAGAATTGCAGgtaactaaat ... agctcttcagGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTT
aaggagtcattgctgctctttgttgaatttaaatttgacaaatttagctcttcagGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTTTTGATGATGTTCCAGAAGCTCTAGAAAAGTGGCATACCTTGGGCATAA
atttgac putative branch site (score: 4)
ctcttc putative PPT
tttgttgaatttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaaataatttagcaaaactaatgtgaaaaaaatgatggtaaagaaggagtcattgctgctctttgttgaatttaaatttgacaaatttagctcttcagGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTTTTGATGATGTTCCAGAAGCTCTAGAAAAGTGGCATACCTTGGGCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC