1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tactttattattttatctgaatgtcccacatatttcatgtttgtggagattgacctatattaggatgatgatcaatgtgctattctgaaattattttcagGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCAATGGAGCTGGAAAAACTACAGCTATTAATTGCTTGACAGGGGTAACTC
species | Glycine max |
transcript | GLYMA06G20360.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGGTTGCTGCTTTAAATGT-AAAGAACTTCACCTTCCAATGCAGTTAAG GGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCEST: gi|193304296|gb|FK270325.1|FK270325
genomic: TTGGTTGCTGCTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAGgtaaagcatt ... ttattttcagGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCC
EST: TTGGTTGCTGCTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAG GGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGEST: gi|254338644|gb|GR849955.1|GR849955
genomic: TTGGTTGCTGCTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAGgtaaagcatt ... ttattttcagGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTG
EST: TTGGTTGCTGCTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAG GGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCEST: gi|15662847|gb|BI700218.1|BI700218
genomic: TTGGTTGCTGCTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAGgtaaagcatt ... ttattttcagGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCC
EST: TTGGTTGCTGCTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAG GGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCEST: gi|208188811|gb|GD981829.1|GD981829
genomic: TTGGTTGCTGCTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAGgtaaagcatt ... ttattttcagGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCC
EST: CTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAG GGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCEST: gi|23062967|gb|BU578537.1|BU578537
genomic: CTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAGgtaaagcatt ... ttattttcagGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCC
EST: TTGGTTGCTGCTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAG GGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCC
genomic: TTGGTTGCTGCTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAGgtaaagcatt ... ttattttcagGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCC
gagattgacctatattaggatgatgatcaatgtgctattctgaaattattttcagGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCAATGGAGCTGGAAAAACTACAGCTATTAATTGCTTGACAGGGGTAACTC
gattgac putative branch site (score: 3)
ttattttc putative PPT
tattctgaaattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactttattattttatctgaatgtcccacatatttcatgtttgtggagattgacctatattaggatgatgatcaatgtgctattctgaaattattttcagGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCAATGGAGCTGGAAAAACTACAGCTATTAATTGCTTGACAGGGGTAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA