1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaagttgcttctttctggtttgaactggaaaacatttgaagaattttgttttggaattctcttaaccattgaatatctctcttcacacctgttgctgatatttttatattatttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTATTAAGGCAAAGCCAAAAACAGCTTAATTTTCAATGGTAAAATTTTGTTA
species | Glycine max |
transcript | GLYMA06G19250.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|208330897|gb|GE132674.1|GE132674
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|214007481|gb|DB987324.1|DB987324
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: AGCTCTGTCATCAGCATCCAAACACC-GCACTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|10253112|gb|BE820878.1|BE820878
genomic: AGCTCTGTCATCTTCTTCCAAACACCTG-TCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|11687638|gb|BF595314.1|BF595314
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|261497053|gb|GT185228.1|GT185228
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|208063771|gb|GD862863.1|GD862863
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: AAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|11687750|gb|BF595426.1|BF595426
genomic: AAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|13789795|gb|BG652386.1|BG652386
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|51337755|gb|CO981621.1|CO981621
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|7640292|gb|AW734597.1|AW734597
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|7639145|gb|AW733474.1|AW733474
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|254322816|gb|GR839837.1|GR839837
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|22523045|gb|BU081856.1|BU081856
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: CTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|193670611|gb|FK609065.1|FK609065
genomic: CTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: TTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|8404251|gb|BE059885.1|BE059885
genomic: TTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|26059361|gb|CA802275.1|CA802275
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|6725472|gb|AW309871.1|AW309871
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTAEST: gi|208032805|gb|GD830464.1|GD830464
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG GGACTGCTATAGCTCTT
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTT
attgaatatctctcttcacacctgttgctgatatttttatattatttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTATTAAGGCAAAGCCAAAAACAGCTTAATTTTCAATGGTAAAATTTTGTTA
tgctgat putative branch site (score: 3)
ttatttttct putative PPT
ttgctgatatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagttgcttctttctggtttgaactggaaaacatttgaagaattttgttttggaattctcttaaccattgaatatctctcttcacacctgttgctgatatttttatattatttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTATTAAGGCAAAGCCAAAAACAGCTTAATTTTCAATGGTAAAATTTTGTTA
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