1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cctattcatcttcactttttatccatttcatttttatagtttgaattcttctaatatactgaaaagtagcagtctcaatctaaaactaaattatcaccagGAAGATGACATTGAAAGGTGCAAAGCTTGTCAGTTGGTGTTCCATAAGCGTTGCTTTAAAAAACTTGCAAACTGTCCCTGTGGGGCTCAACTCAGATTGA
species | Glycine max |
transcript | GLYMA06G19200.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGCCCGACAAGATTGCATTGACCCATCTTCACTCATTTTCCCATTTCAG -AAGATGACATTGAAAGGTGCAAAGCTTGTCAGTTGGTGTTCCATAAGCGTEST: gi|19053024|gb|BM731691.1|BM731691
genomic: ATGCCCGACAAGATTGCATTGACCCATCTTCACTCATTTTCCCATTTCAGgtgtgtatcc ... ttatcaccagGAAGATGACATTGAAAGGTGCAAAGCTTGTCAGTTGGTGTTCCATAAGCGT
EST: ATGCCCGACAAGATTGCATTGACCCATCTTCACTCATTTTCCCATTTCAN GAAGATGACATTGAAAGGTGC
genomic: ATGCCCGACAAGATTGCATTGACCCATCTTCACTCATTTTCCCATTTCAGgtgtgtatcc ... ttatcaccagGAAGATGACATTGAAAGGTGC
ttcttctaatatactgaaaagtagcagtctcaatctaaaactaaattatcaccagGAAGATGACATTGAAAGGTGCAAAGCTTGTCAGTTGGTGTTCCATAAGCGTTGCTTTAAAAAACTTGCAAACTGTCCCTGTGGGGCTCAACTCAGATTGA
aactaaa putative branch site (score: 2)
aatctaaaactaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctattcatcttcactttttatccatttcatttttatagtttgaattcttctaatatactgaaaagtagcagtctcaatctaaaactaaattatcaccagGAAGATGACATTGAAAGGTGCAAAGCTTGTCAGTTGGTGTTCCATAAGCGTTGCTTTAAAAAACTTGCAAACTGTCCCTGTGGGGCTCAACTCAGATTGA
-ctattca
- - - - tcttcac
- - - - - - - - - - - ccatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagta