Sequence
atgc intronic sequence ATGC exonic sequence...aacaacattcatacagataaattgtgtactggtaaaacttaacttgaaacttttagacttttggcatgagcctcagtgagttactgcctttattttgcagTTGTGGCAAATTAATGTAGCTGAGCAAATGATTTTGGATGATATGGCAATTAATCCTGATAAATATGAAGGCAAAAAACTGTCAGATTTGGTTGATGAAG
Basic information
species | Glycine max |
transcript | GLYMA06G18080.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G18080.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G48500.2 (Arabidopsis thaliana), 3'ss of exon 7
--------------aacaacattcatacagataaattgtgtactggtaaaac-ttaacttga--aacttttagacttttggcatgagcctcagtgagttactgcctttattttgcagTTGTGGCAAATTAATGTAGCTGAGCAAATGATTTTGGATGATATGGCAATTAATCCTGATAAATATGAAGGCAAAAAACTGTCAGATTTGGTTGATGAAG
|| | || | | | | || || || | | | ||| || | |||| | ||||| | | ||| || || | ||||||||||||||| || |||||||||||||||||||||||| |||| | | ||| |||| ||||| ||||||||||| || ||||| || |||||| |
gtattttcctgagcaaaagggttggt-tatgtgatttttgctttgtttactcattaggtttattggctttctaaattttg-tgaaaccgtcaacacatttct--ttcccgtttgcagTTGTGGCAGATACATGTAGCTGAGCAAATGATTTTGGGTGATTACGAAGCTAACCCTGCAAAATACGAAGGCAAAAAGCTATCAGAATTATCTGATGATG
upper sequence: GLYMA06G18080.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 8
-aacaacattcatacagataaattgtgtactggtaaaacttaacttgaaacttttagacttttggcatgagcctcagtgagttactgcctttat--tttgcagTTGTGGCAAATTAATGTAGCTGAGCAAATGATTTTGGATGATATGGCAATTAATCCTGATAAATATGAAGGCAAAAAACTGTCAGATTTGGTTGATGAAG
|| | |||| |||| | | | || | || | ||| | | | || ||| | | | | || | | | ||| | ||||||| ||||| || |||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| ||| |||| || |||||| |
taatatcattgttacatggtagtctttcaccag---gggctatatagaatcaataatacaagcggcctttgattaattgtctgcatttttatatgctatgcagTTATGGCAGATCCATGTTGCTGAGCAAATGATTTTGGATGATATGGAGGTTAATCCTCATAAATATGAGGGCAAAAAGCTGACAGAGTTAACTGATGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaacttttagacttttggcatgagcctcagtgagttactgcctttattttgcagTTGTGGCAAATTAATGTAGCTGAGCAAATGATTTTGGATGATATGGCAATTAATCCTGATAAATATGAAGGCAAAAAACTGTCAGATTTGGTTGATGAAG
cctttatttt CT-rich tract
tttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacaacattcatacagataaattgtgtactggtaaaacttaacttgaaacttttagacttttggcatgagcctcagtgagttactgcctttattttgcagTTGTGGCAAATTAATGTAGCTGAGCAAATGATTTTGGATGATATGGCAATTAATCCTGATAAATATGAAGGCAAAAAACTGTCAGATTTGGTTGATGAAG
- - acattca
- - - - - - - - - - - tgtgtac
- - - - - - - - - - - - - - - -gtaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcagt