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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgccgagagttagttatagaatctgtaaataattactttctaacttttgctttataaatgctttcctttttagGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCG

Basic information

species Glycine max
transcript GLYMA06G16740.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16740.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------gtaagtgccgagagt-tagttatagaatctgtaaataattactttctaacttttgctttataaatgctttcctttttagGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCG
                        ||  |   ||     | ||| |  |||||    ||| | | ||  | | |||  ||||   | |  |||  ||  |||||||| | |||||| ||||||||||| |||||||| || ||||| |||||||| ||| | || ||||||||||||||| |||| ||
ggaattactaatttagcatatacttagttaatgacttcgtggttttgaaatctaagcata-tgagttagttattttgactttcatagta-tttttttaatagGGAGCGAAGGATGAGTTCACCCTTGATCTTGTAGAGCAGTGTTCATTTCAAAAGCAACGAGTAATGCATCTTGTGATGACTTCTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530160|gb|EH258294.1|EH258294
EST:     TAGAAGTACTAAAAGAGGTCCTTGATGTTGTTGATGCTCAAAATCCTCAG                         GGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAA
genomic: TAGAAGTACTAAAAGAGGTCCTTGATGTTGTTGATGCTCAAAATCCTCAGgtaagtgccg ... tcctttttagGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatctgtaaataattactttctaacttttgctttataaatgctttcctttttagGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCG
                   ttctaac  putative branch site (score: 1)
                                        tgctttccttttt  putative PPT
       taaataattactttct  TA-rich tract