1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgagaagctaatgctcttttcagcactgcatattttattattttccccctcccttcagaacagattgggaaatactgcctaattattctacacgtgcagATTTGTATAGTCCCTTGTCTCCAAAAGTATCGTGGTATATCCAAGGCAATGGCGAACCTTGGAAACAGAAAGAAGAAGATGGGCCACCCTTTAATTTAAT
species | Glycine max |
transcript | GLYMA06G16670.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACAACTGTATTACACAGTACAAGAGAGCCAGATCCTCCAGTCAATACAG ATTTGTATAGTCCCTTGTCTCCAAAAGTATCGTGGTATATCCAAGGCAATGEST: gi|9259190|gb|BE347337.1|BE347337
genomic: TACAACTGTATTACACAGTACAAGAGAGCCAGATCCTCCAGTCAATACAGgtattgaatc ... acacgtgcagATTTGTATAGTCCCTTGTCTCCAAAAGTATCGTGGTATATCCAAGGCAATG
EST: TACAACTGTATTACACAGTACAAGAGAGCCAGATCCTCCAGTCAATACAG ATTTGTATAGTCCCTTGTCTCCAAAAGTATCGTGGTATATCCAAGGCAATG
genomic: TACAACTGTATTACACAGTACAAGAGAGCCAGATCCTCCAGTCAATACAGgtattgaatc ... acacgtgcagATTTGTATAGTCCCTTGTCTCCAAAAGTATCGTGGTATATCCAAGGCAATG
ccccctcccttcagaacagattgggaaatactgcctaattattctacacgtgcagATTTGTATAGTCCCTTGTCTCCAAAAGTATCGTGGTATATCCAAGGCAATGGCGAACCTTGGAAACAGAAAGAAGAAGATGGGCCACCCTTTAATTTAAT
gcctaat putative branch site (score: 3)
taattattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagaagctaatgctcttttcagcactgcatattttattattttccccctcccttcagaacagattgggaaatactgcctaattattctacacgtgcagATTTGTATAGTCCCTTGTCTCCAAAAGTATCGTGGTATATCCAAGGCAATGGCGAACCTTGGAAACAGAAAGAAGAAGATGGGCCACCCTTTAATTTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - aatgctc
- - - - - - - - - - - - cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgccta