1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaaaaagtttgagtcaataaatctctctccccttagcccttcaaaaaaaatgtttttctttcctgacattcatttaattcacatttaccaaatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAAG
species | Glycine max |
transcript | GLYMA06G15180.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTA TGCTTTGGTCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAAEST: gi|298166504|gb|HO009943.1|HO009943
genomic: AGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagtactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAA
EST: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTA TGCTTTGGTCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAAEST: gi|13481567|gb|BG510910.1|BG510910
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagtactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAA
EST: GAGGACTTCTGCGATCTCATTCACAAGGACATGCTTAAACAGGTTAAGTA TGCTTTGGTCCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAEST: gi|58016565|gb|CX703307.1|CX703307
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagtactt ... aatgatgcagTGCTTTGGTC-TGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCA
EST: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTA TGCTTTGGTCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAA
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagtactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAA
aaaaatgtttttctttcctgacattcatttaattcacatttaccaaatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAAG
atttaattcacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaagtttgagtcaataaatctctctccccttagcccttcaaaaaaaatgtttttctttcctgacattcatttaattcacatttaccaaatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAAG
aaaaaag
- - - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - cccttca
- - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcaca