Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgtagtttcttaactgcgtgcaatggttggttgtattcattttgcattgtaattaactcttatgtttctgctgtttgatttcattttgtagAATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTCAAGGATTG

Basic information

species Glycine max
transcript GLYMA06G14760.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14760.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G40660.1 (Arabidopsis thaliana), 3'ss of exon 8
--------gtgatgtagtttcttaac--------tgcgtgcaatggttggttgtattcattttgcattgtaattaactcttatgtttctgctgttt---gatttc---------attttgtagAATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTCAAGGATTG
         ||   || |||  |||         |  | | ||   |||||| |||  || |   | | |  || |   |||  | |||   ||||   |||| |         ||  || |||| || |  |||| ||| || |||||||||||||||||||| ||| | ||||| ||||| |||||| ||
gtatagttatgtcttaatttactaatattgtttgtaggcgtaaaatttggtt-tatcaatctataaatttggttgaaagttacttatctatggtttcttgattcctgcgttattatgatgaagAACCGCCTCGTTGCACTCATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATGTCACAAGGACTG

upper sequence: GLYMA06G14760.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0067g03060.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------------------gtgatgtagttt-cttaactgcgtgcaatggttggttgtattcattttgcatt-gtaattaactcttatgtttctgctgtttgatttcattttgtagAATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTCAAGGATTG
                                     |   |  | ||| |||   |   | ||| | ||  || |  |  | |    ||  |   |||      | ||| || |||| | |     | | ||||| ||||||||||| || || |||||||| ||||||||||| ||||| |||||||||||  ||||| ||
gtatgtataatactagagttggttagggaaagttcctgcacttgatttttctttgttcttttcaaggttttcttattattttctgatgtttatttctaaaatgggtctttttgatgttggttcctgatgtttagAACCGTCGTGTTGTGCTAATCACAAATGTTAAACCTGGAAAGCTACGAGATGTGATGTCAGAAGGACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208067423|gb|GD865287.1|GD865287
EST:     GGCAGGTTGTTAGTGGTTTGGCAAAGTACTGCAATCCTGATGAGTTGACG                         AATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGAT
genomic: GGCAGGTTGTTAGTGGTTTGGCAAAGTACTGCAATCCTGATGAGTTGACGgtgatgtagt ... cattttgtagAATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattttgcattgtaattaactcttatgtttctgctgtttgatttcattttgtagAATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTCAAGGATTG
                                          tttcatttt  CT-rich tract
             taattaactcttat  TA-rich tract