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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaagcttttaatggaactaggattatagtgttgattgctggttgagtttaagcatcatatgaaatatttttcattattttggtgtactcatctaggttcaatactgtttgttgttggtttaatgattatgttgtaaaattttacattattttttatttattcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG

Basic information

species Glycine max
transcript GLYMA06G14050.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14050.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv16s0098g01040.t01 (Vitis vinifera), 3'ss of exon 8
gtttgaagcttttaatggaactaggattatagtgttgattgctggttgagtttaagcatcatatgaaatatttttcattattttggtgtactcatctaggttcaatactgtttgttgttggtttaatgattatgttgtaaaattttacattattttttatttattcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG
                                                                       |||  ||    ||      |  | | |  |  | |||||  | |||     ||  |   |||  || || |            | || | |     | |||||||||||||||||||| ||||| || || ||||| || ||||||||||| ||||| ||||||| | ||
----------------------------------------------------------------------gtttgtatctgcttataaatcaaaccaacctgaagtactgcgtcttg---aattcttagctatagtgaaaga---------gcatcttgtctg---gtatagGTTCATCGCTTGAGGCTGCTTGGAGACTATCATCACTCTACTCGAATTGCTTTTGTCGAGTTTGTAATG

upper sequence: GLYMA06G14050.1 (Glycine max), 3'ss of exon 9
lower sequence: EFJ30509 (Selaginella moellendorffii), 3'ss of exon 7
gtttgaagcttttaatggaactaggattatagtgttgattgctggttgagtttaagcatcatatgaaatatttttcattattttggtgtactcatctaggttcaatactgtttgttgttggtttaatgattatgttgtaaaattttacattattttttatttattcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG
                                                                                                   ||   |  |  |||   ||   | |  |  |  ||||     |||||||     |||   | | ||| || ||||    ||||||||  | || || || ||||||||||| |||||||| || ||||||||||| ||||||
---------------------------------------------------------------------------------------------------gtaagaagcattttcgagtctctctcctt-tcgtgtttgcgcattttacgactctttggttctcttcgtccagGTGTCGCGCTTGAGATTGCTGGGCGACTACCATCATTCTACTCGAATAGCGTTTGTTGAGTTCGCACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343884|gb|GR857640.1|GR857640
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193554375|gb|FK511348.1|FK511348
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|27424740|gb|CA936260.1|CA936260
EST:     AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|6481922|gb|AW201193.1|AW201193
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193442856|gb|FK404234.1|FK404234
EST:     TACTTTCTAAGTCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: TAC--TC-AAG-CAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|21888556|gb|BQ741769.1|BQ741769
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193301047|gb|FK265554.1|FK265554
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTCGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|192319171|gb|FK009111.1|FK009111
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193423912|gb|FK390251.1|FK390251
EST:     CTTAACTTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTT-AC-TCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|9205289|gb|BE331513.1|BE331513
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193379415|gb|FK344861.1|FK344861
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|192319172|gb|FK009112.1|FK009112
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|9205272|gb|BE331496.1|BE331496
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193407747|gb|FK373109.1|FK373109
EST:     AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|254324021|gb|GR840446.1|GR840446
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193688938|gb|FK627887.1|FK627887
EST:     CTTACTCAAGCAGATGTCAAACACTTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTG
genomic: CTTACTCAAGCAGATGTCAAACAC-TTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTG
EST: gi|6481926|gb|AW201197.1|AW201197
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193422971|gb|FK389282.1|FK389282
EST:     AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|151397590|gb|EV267463.1|EV267463
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|21677144|gb|BQ629495.1|BQ629495
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|8403307|gb|BE058941.1|BE058941
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|15661924|gb|BI699295.1|BI699295
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|254343883|gb|GR857639.1|GR857639
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtttaatgattatgttgtaaaattttacattattttttatttattcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG
   gtttaat  putative branch site (score: 4)
                                   ttttttatttattc  putative PPT
     ttaatgattatgttgt  TA-rich tract