1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgatgtgctaatattttttttatatcatgttattgtttataagtttcttggtttcactatcacctattatttatgaagatactctgatactgtactttccactccaacacagGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAG
species | Glycine max |
transcript | GLYMA06G13240.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAG GTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCCEST: gi|31305797|gb|CD391000.1|CD391000
genomic: CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGgtgatgtgct ... tccaacacagGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC
EST: AGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAG GTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCCEST: gi|193325832|gb|FK290271.1|FK290271
genomic: AGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGgtgatgtgct ... tccaacacagGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC
EST: CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAG GTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGG
genomic: CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGgtgatgtgct ... tccaacacagGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGG
tatcacctattatttatgaagatactctgatactgtactttccactccaacacagGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAG
ctctgat putative branch site (score: 4)
ctttccactcc putative PPT
tattatttatgaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgtgctaatattttttttatatcatgttattgtttataagtttcttggtttcactatcacctattatttatgaagatactctgatactgtactttccactccaacacagGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG