Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctttttctctcctttagttaccaagtctctttgtgcaattacaaagagtgactgtaatggttcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCAGTCGACATGATGACATTGTGAAAGGAACTGCTGATTCTGGT

Basic information

species Glycine max
transcript GLYMA06G12570.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19935386|gb|BQ080416.1|BQ080416
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|207752136|gb|GD724521.1|GD724521
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|207710083|gb|GD691173.1|GD691173
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTT
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTT
EST: gi|308098253|gb|HO759994.1|HO759994
EST:     ACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: ACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|207752902|gb|GD725482.1|GD725482
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|192296865|gb|FG991906.1|FG991906
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGG-ATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|19934603|gb|BQ079633.1|BQ079633
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|19453094|gb|BM954504.1|BM954504
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaccaagtctctttgtgcaattacaaagagtgactgtaatggttcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCAGTCGACATGATGACATTGTGAAAGGAACTGCTGATTCTGGT
                                            ttcactttc  CT-rich tract
                    aattacaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtttctttttctctcctttagttaccaagtctctttgtgcaattacaaagagtgactgtaatggttcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCAGTCGACATGATGACATTGTGAAAGGAACTGCTGATTCTGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT