1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgaacatttacatatgttttaattagataaatgcttataaaataacgtggaaacgtctaggtgtttgtaatttaaaaagttctcggtaataaactttatttgcttcttttaatttaaagcactggaaggttaactataataagtctataatactttttttcttgcttgtaacagGTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCCCTGGCTGCATATATATTTACAACCAACAAGAAGTTAAAGGAGCAGTTCG
species | Glycine max |
transcript | GLYMA06G12010.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACG GTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCCEST: gi|151398427|gb|EV268298.1|EV268298
genomic: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACGgtatgaacat ... cttgtaacagGTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCC
EST: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACG GTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCCEST: gi|23725278|gb|BU760599.1|BU760599
genomic: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACGgtatgaacat ... cttgtaacagGTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCC
EST: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACG GTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCCEST: gi|254324505|gb|GR833930.1|GR833930
genomic: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACGgtatgaacat ... cttgtaacagGTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCC
EST: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACG GTGAATAA-GTGGAAGAAAGTATTGATTTGATCAACTCAG-AACAAAGCCCEST: gi|58020263|gb|CX707005.1|CX707005
genomic: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACGgtatgaacat ... cttgtaacagGTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCC
EST: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACG GTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCCEST: gi|302141284|gb|HO212160.1|HO212160
genomic: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACGgtatgaacat ... cttgtaacagGTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCC
EST: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACG GTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCC
genomic: CTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACGgtatgaacat ... cttgtaacagGTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCC
cactggaaggttaactataataagtctataatactttttttcttgcttgtaacagGTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCCCTGGCTGCATATATATTTACAACCAACAAGAAGTTAAAGGAGCAGTTCG
ggttaac putative branch site (score: 3)
tactttttttcttgct putative PPT
ttaactataataagtc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaacatttacatatgttttaattagataaatgcttataaaataacgtggaaacgtctaggtgtttgtaatttaaaaagttctcggtaataaactttatttgcttcttttaatttaaagcactggaaggttaactataataagtctataatactttttttcttgcttgtaacagGTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCCCTGGCTGCATATATATTTACAACCAACAAGAAGTTAAAGGAGCAGTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG