1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaaagttgcactataatgctgtgaggttgtagttataacatttcaatgaaaatatttacttaacctggcagtgtcatattgatatatattaatcctgcagGTAGAGCACAAAATTCAGTCAGGATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAATGCTTAGGAAAGATTGGGCTCCTCTGG
species | Glycine max |
transcript | GLYMA06G11270.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGGCAGTGTCTGACTATTATGTTCCTTGGAAGGACATG GTAGAGCACAAAATTCAGTCAGGATCTCACCTTTTGGATGTGAAACTAGTT
genomic: CGGCAGTGTCTGACTATTATGTTCCTTGGAAGGACATGgtataaatat ... aatcctgcagGTAGAGCACAAAATTCAGTCAGGATCTCACCTTTTGGATGTGAAACTAGTT
atgaaaatatttacttaacctggcagtgtcatattgatatatattaatcctgcagGTAGAGCACAAAATTCAGTCAGGATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAATGCTTAGGAAAGATTGGGCTCCTCTGG
tattaat putative branch site (score: 2)
tgtcatattgatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagttgcactataatgctgtgaggttgtagttataacatttcaatgaaaatatttacttaacctggcagtgtcatattgatatatattaatcctgcagGTAGAGCACAAAATTCAGTCAGGATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAATGCTTAGGAAAGATTGGGCTCCTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - tgcacta
- - - - - - - aatgctg
- - - - - - - - - - - gaggttg
- - - - - - - - - - - - - - - - - - - - - -caatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagtgtc