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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttggaattgtacatactgacactgtttttcttactaaacaaggctataaaacaaaccttttgtttttgaagGGTGAATGTTGCTGTACAAAGGGAGCTTCACAAACCCGAGTCTGACCGTTCTTGCATACATTTGGAATTTGATATATCAGGGACTGGCTTAAC

Basic information

species Glycine max
transcript GLYMA06G10180.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193681256|gb|FK622866.1|FK622866
EST:     CTGTGTTTGATATTCATCATCCTTGCAG                         GGTGAATGTTGCTGTACAAAGGGAGCTTCACAAACCCGAGTCTGACCGTTC
genomic: CTGTGTTTGATATTCATCATCCTTGCAGgtgcttggaa ... gtttttgaagGGTGAATGTTGCTGTACAAAGGGAGCTTCACAAACCCGAGTCTGACCGTTC
EST: gi|193455277|gb|FK419254.1|FK419254
EST:     GGCAAATGGGAATGCTGTGTTTGATATTCATCATCCTTGCAG                         GGTGAATGTTGCTGTACAAAGGGAGCTTCACAAACCCGAGTCTGACCGTTC
genomic: GGCAAATGGGAATGCTGTGTTTGATATTCATCATCCTTGCAGgtgcttggaa ... gtttttgaagGGTGAATGTTGCTGTACAAAGGGAGCTTCACAAACCCGAGTCTGACCGTTC
EST: gi|23064515|gb|BU579288.1|BU579288
EST:     GTAACCGTGGCAAATGGGAATGCTGTGTTTGATATTCATCATCCTTGCAG                         GGTGAATGTTGCTGTACAAAGGGAGCTTCACAAACCCGAGTCTGACCGTTC
genomic: GTAACCGTGGCAAATGGGAATGCTGTGTTTGATATTCATCATCCTTGCAGgtgcttggaa ... gtttttgaagGGTGAATGTTGCTGTACAAAGGGAGCTTCACAAACCCGAGTCTGACCGTTC
EST: gi|254324305|gb|GR840622.1|GR840622
EST:     GTAACCGTGGCAAATGGGAATGCTGTGTTTGATATTCATCATCCTTGCAG                         GGTGAATGTTGCTGTACAAAGGGAGCTTCACAAACCCGAGTCTGACCGTTC
genomic: GTAACCGTGGCAAATGGGAATGCTGTGTTTGATATTCATCATCCTTGCAGgtgcttggaa ... gtttttgaagGGTGAATGTTGCTGTACAAAGGGAGCTTCACAAACCCGAGTCTGACCGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacactgtttttcttactaaacaaggctataaaacaaaccttttgtttttgaagGGTGAATGTTGCTGTACAAAGGGAGCTTCACAAACCCGAGTCTGACCGTTCTTGCATACATTTGGAATTTGATATATCAGGGACTGGCTTAAC
               tactaaa  putative branch site (score: 1)
                                       ccttttgttttt  putative PPT
        tttttcttactaaa  TA-rich tract