1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gccttgtctgactagatgacattagagactactgggtctgtagcatatactatactgtgtactctttaatgcattctcacctgcatcttaaatgtttcagGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCG
species | Glycine max |
transcript | GLYMA06G08480.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAG GTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCAEST: gi|193529120|gb|FK484311.1|FK484311
genomic: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGgtaactaagt ... aatgtttcagGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCA
EST: TTACAGAGCTCCCGAGATTATTCTAG GTCTAGGATGGTCATATCCATGCGATTTGTGGAGTGTTGGATGTATTCTCAEST: gi|193585084|gb|FK539449.1|FK539449
genomic: TTACAGAGCTCCCGAGATTATTCTAGgtaactaagt ... aatgtttcagGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCA
EST: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAG GTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCAEST: gi|208256104|gb|GE054441.1|GE054441
genomic: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGgtaactaagt ... aatgtttcagGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCA
EST: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAG GTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCAEST: gi|13481114|gb|BG510457.1|BG510457
genomic: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGgtaactaagt ... aatgtttcagGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCA
EST: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAG GTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCAEST: gi|22933892|gb|BU551031.1|BU551031
genomic: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGgtaactaagt ... aatgtttcagGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCA
EST: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAG GTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGNNNGATGTATTCTCAEST: gi|120529842|gb|EH257976.1|EH257976
genomic: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGgtaactaagt ... aatgtttcagGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCA
EST: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAG GTCTAGGATGGTCATATCCATGTGATTTGTGGAGTTTTGGAAGTATTCTCA
genomic: TAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGgtaactaagt ... aatgtttcagGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCA
tatactatactgtgtactctttaatgcattctcacctgcatcttaaatgtttcagGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCG
ttctcac putative branch site (score: 2)
ttaaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccttgtctgactagatgacattagagactactgggtctgtagcatatactatactgtgtactctttaatgcattctcacctgcatcttaaatgtttcagGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG