Sequence
atgc intronic sequence ATGC exonic sequence...gatagtataaaaatccttaatactatcggtgtgacagtgcatctactattttctgcaattcatatacatcatgtaatggcttcttttccaccaactacagGTTCCCTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGTGAGAGATTGGTATCATCATTGAGTACTCAAGGCACGAACATAGTTAGAGAAG
Basic information
species | Glycine max |
transcript | GLYMA06G08170.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G08170.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G005791_T01 (Zea mays), 3'ss of exon 5
gatagtataaaaatccttaatactatcgg--tgtgacagtgcatctactattttctgcaattcatatacatcatgtaa-tggcttcttttccaccaactacagGTTCCCTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGTGAGAGATTGGTATCATCATTGAGTACTCAAGGCACGAACATAGTTAGAGAAG
| | ||| || | || | || | || | ||| | | | | | ||| | | | |||| | || | |||||||| |||||||| || |||||||||||||| |||||||| || |||||| | | ||||||||| || | || ||||||| |||| || | || |
---atcctttgccccctgaaaaagattgcatcgtaaatttgaactacacattgctttctacataattgcatggtaaatctcgctttgtatcgcaatgttgcagGTTCCTTTTTTCTCCCAGATGGATGATCAGCTTCTTGATGCCATCTGTGAGCGTCTTGTATCATCACTGTGCACAAAAGGCACATACATTGTCCGTGAGG
upper sequence: GLYMA06G08170.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0069g00790.t01 (Vitis vinifera), 3'ss of exon 6
gatagtataaaaatccttaatactatcggtgtgacagtgcatctactattttctgcaattcatat--acatcatgtaatggcttcttttccaccaactacagGTTCCCTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGTGAGAGATTGGTATCATCATTGAGTACTCAAGGCACGAACATAGTTAGAGAAG
| || || | || | | | || | || || | | || || | || | |||||| | | || | |||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||| || |||||||| | || |
tcaaaaatggaatcctttcacttcacc--tggtagagcaaatgtggagtaaaatgtaaattatcttgacatcagcttacattggaacttgccccaaatgcagGTTCCCTTTTTCTCACAGATGGATGATCAGCTACTTGATGCAATATGTGAGCGCCTAGTATCATCCTTGAGTACTCAAGGTACCTACATAGTTCGCGAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattttctgcaattcatatacatcatgtaatggcttcttttccaccaactacagGTTCCCTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGTGAGAGATTGGTATCATCATTGAGTACTCAAGGCACGAACATAGTTAGAGAAG
cttcttttccacc CT-rich tract
aattcatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatagtataaaaatccttaatactatcggtgtgacagtgcatctactattttctgcaattcatatacatcatgtaatggcttcttttccaccaactacagGTTCCCTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGTGAGAGATTGGTATCATCATTGAGTACTCAAGGCACGAACATAGTTAGAGAAG
- - - ataaaaa
- - - - - - - - - - - - - - gtgtgac
- - - - - - - - - - - - - - - - - - -tgcatct
- - - - - - - - - - - - - - - - - - - - - - - - - ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtaa