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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acagagttattgggtctgcacattgataaccttttcattctttctaattgaatctttaggaaattgtgatgatgaattttgtgtttttgttttgcatcagCACTCACAGCTGATTGAAAGACCTCCTGAATTGGTTTTCAGACGTGGTGCTATAATCCAGAGGGAATCTTCT

Basic information

species Glycine max
transcript GLYMA06G07920.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670391|gb|BE191498.1|BE191498
EST:     ATAAACCTGAAACTTTATATGGGGTAATTGATTCAATGTTGTGTGAAAAG                         CACTCACAGCTGATTGAAAGACCTCCTGAATTGGTTTTCAGACGTGGTGCT
genomic: ATAAACCTGAAACTTTAGATGGGGTAATTGATTCAATGTTGTGTGAAAAGgtacattgct ... tttgcatcagCACTCACAGCTGATTGAAAGACCTCCTGAATTGGTTTTCAGACGTGGTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgaatctttaggaaattgtgatgatgaattttgtgtttttgttttgcatcagCACTCACAGCTGATTGAAAGACCTCCTGAATTGGTTTTCAGACGTGGTGCTATAATCCAGAGGGAATCTTCT
 ttctaat  putative branch site (score: 2)
                                      tttttgtttt  putative PPT
                             aattttgtgttttt  TA-rich tract