1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgatgtgactgttgatgttttttcatcctatttggagttagcaagtttggtctgtcatttggaaatttaatttcttgagcttttggactttctaatgtagATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCAATAAATTCAGAGCCAGAAGGAAACACTAGCAACAGTGCTCGACAAGGTC
species | Glycine max |
transcript | GLYMA06G07190.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCCAAGCTTCTACCAGGAGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAG ATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCAEST: gi|208197799|gb|GD998950.1|GD998950
genomic: TGCCAAGCTTCTACCAGGAGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAGgtaagtttct ... tctaatgtagATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCA
EST: AGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAG ATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCAEST: gi|20811750|gb|BQ296228.1|BQ296228
genomic: AGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAGgtaagtttct ... tctaatgtagATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCA
EST: TACCAGGAGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAG ATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCAEST: gi|9564144|gb|BE473653.1|BE473653
genomic: TACCAGGAGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAGgtaagtttct ... tctaatgtagATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCA
EST: TGCCAAGCTTCTACCAGGAGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAG ATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCAEST: gi|208219686|gb|GE016612.1|GE016612
genomic: TGCCAAGCTTCTACCAGGAGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAGgtaagtttct ... tctaatgtagATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCA
EST: CTTCTACCAGGAGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAG ATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCAEST: gi|10842921|gb|BF067115.1|BF067115
genomic: CTTCTACCAGGAGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAGgtaagtttct ... tctaatgtagATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCA
EST: TGCCAAGCTTCTACCAGGAGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAG ATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCA
genomic: TGCCAAGCTTCTACCAGGAGCCTCCTCCTCCTAGGGCGGAGTTAAGAAAGgtaagtttct ... tctaatgtagATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCA
tttggtctgtcatttggaaatttaatttcttgagcttttggactttctaatgtagATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCAATAAATTCAGAGCCAGAAGGAAACACTAGCAACAGTGCTCGACAAGGTC
ttctaat putative branch site (score: 2)
ctttct CT-rich tract
atttggaaatttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgtgactgttgatgttttttcatcctatttggagttagcaagtttggtctgtcatttggaaatttaatttcttgagcttttggactttctaatgtagATGCCAACTACCAGAGCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCAATAAATTCAGAGCCAGAAGGAAACACTAGCAACAGTGCTCGACAAGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - gtgactg
- - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - tctgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttttg