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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcattactaattcgcaatgaaatctatcacttaattgacttggttatctgtgcttcttttaggctctatgatgtgttcttgctgtcaatctttgtttgtgtctttccttttcctatgctagTGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTT

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05900.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 7
gtgagcattactaattcgcaatgaaatctatcacttaattgacttggttatctgtgcttcttttaggctctatgatgtgttcttgctgtcaatctttgtttgtgtctt---tccttttcctatgctagTGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTT
                 |  |  | | | ||          | ||| | || |     ||||||   |||||||||||  |  | |||| ||||  | ||    ||     |  | || | ||  ||||||  ||||||| ||||||||||| ||| |  | ||||| || ||||||||||| ||||| |||||||||||
-----------------gtgagtatacccat----------atttgatgatatcaaactctttttcactctatgatgttgtact-ctgtaaatcgatattgagctcgagaattatgtttcaat-ttagTGGGCTGCGAGGAAACAATTTGGTTGGTACTTTGTCTCCTGATATGTGCCAGTTGACTGGGTTGTGGTATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208211558|gb|GE010911.1|GE010911
EST:     AGCGGGGAGATACCAAGACTTATATATTGGAATGAAGTTTTGCAATATCT                         TGGCTTGACGAAGGTAACAATTTGGTGGG
genomic: AGCGGGGAGATACCAAGACTTATATATTGGAATGAAGTTTTGCAATATCTgtgagcatta ... cctatgctagTGGCTTG-CGA-GGTAACAATTTGGTGGG
EST: gi|193419263|gb|FK382759.1|FK382759
EST:     AGCGGGGAGATACCAAGACTTATATATTGGAATGAAGTTTTGCAATATCT                         TGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCA
genomic: AGCGGGGAGATACCAAGACTTATATATTGGAATGAAGTTTTGCAATATCTgtgagcatta ... cctatgctagTGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgatgtgttcttgctgtcaatctttgtttgtgtctttccttttcctatgctagTGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTT
                      tctttgtttgtgtctt  CT-rich tract
                    aatcttt  TA-rich tract