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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgataattcttgcttgtttttatgtccattgatgtgttaagttatgcatgtgtataatttaattctatctttcaaccttttgctttcagATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTTTGAGAATGACAGATTGTTTTAATGGGAAGGTCAAACTTCCACGCAACAG

Basic information

species Glycine max
transcript GLYMA06G04210.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14516405|gb|BI095077.1|BI095077
EST:     AAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAG                         ATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTT
genomic: AAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAGgtattttgat ... ttgctttcagATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTT
EST: gi|192331603|gb|FK019964.1|FK019964
EST:     CTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAG                         ATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTT
genomic: CTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAGgtattttgat ... ttgctttcagATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTT
EST: gi|15812519|gb|BI784794.1|BI784794
EST:     CTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAG                         ATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTT
genomic: CTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAGgtattttgat ... ttgctttcagATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttaagttatgcatgtgtataatttaattctatctttcaaccttttgctttcagATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTTTGAGAATGACAGATTGTTTTAATGGGAAGGTCAAACTTCCACGCAACAG
                      atttaat  putative branch site (score: 4)
                                 tctttcaacctttt  putative PPT
                  tataatttaattctat  TA-rich tract