1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtacatggaagttctaatgcagtcatttcctttcacactttgcattgttaaggtgccttatccacttttcatatgcttggaacagCCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCTTTTGG
species | Glycine max |
transcript | GLYMA05G37850.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTGTCAGTATGAGAAG CCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTEST: gi|193446481|gb|FK415812.1|FK415812
genomic: AATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTGTCAGTATGAGAAGgtacatggaa ... cttggaacagCCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGT
EST: AATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTGTCAGTATGAGAAG CCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTEST: gi|19453403|gb|BM954813.1|BM954813
genomic: AATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTGTCAGTATGAGAAGgtacatggaa ... cttggaacagCCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGT
EST: ATGGTTTTGTCAGTATGAGAAG CCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTEST: gi|120493888|gb|EH222055.1|EH222055
genomic: ATGGTTTTGTCAGTATGAGAAGgtacatggaa ... cttggaacagCCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGT
EST: AATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTGTCAGTATGAGAAG CCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTEST: gi|9204205|gb|BE330429.1|BE330429
genomic: AATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTGTCAGTATGAGAAGgtacatggaa ... cttggaacagCCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGT
EST: AATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTGTCAGTATGAGAAG CCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGT
genomic: AATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTGTCAGTATGAGAAGgtacatggaa ... cttggaacagCCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGT
tttcacactttgcattgttaaggtgccttatccacttttcatatgcttggaacagCCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCTTTTGG
ttttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatggaagttctaatgcagtcatttcctttcacactttgcattgttaaggtgccttatccacttttcatatgcttggaacagCCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCTTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC