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...atgttttcgtcttctgataaataaaaaaatgggcaaggtttctctaattgttatttccgctccctttttctttttttctcacaaatttatcgccgtgcagGACTAAATATAGCATCGATGATATGTGCCGCGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGTGCATCTGCAGATTCCTCCAATTGATGT
species | Glycine max |
transcript | GLYMA05G36850.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAATTGTTTATGCATCAACAGAGAAAGCGGAAAGAGAACTTAATTGGAA GACTAAATATAGCATCGATGATATGTGCCGCGATCAATGGAATTGGGCTAGEST: gi|19346907|gb|BM891795.1|BM891795
genomic: GAAATTGTTTATGCATCAACAGAGAAAGCGGAAAGAGAACTTAATTGGAAgtaagtatta ... cgccgtgcagGACTAAATATAGCATCGATGATATGTGCCGCGATCAATGGAATTGGGCTAG
EST: GAAATTGTTTATGCATCAACAGAGAAAGCGGAAAGAGAACTTAATTGGAA GACTAAATATAGCATCGATGATATGTGCCGCGATCAATGGAATTGGGCTAGEST: gi|298193906|gb|HO040554.1|HO040554
genomic: GAAATTGTTTATGCATCAACAGAGAAAGCGGAAAGAGAACTTAATTGGAAgtaagtatta ... cgccgtgcagGACTAAATATAGCATCGATGATATGTGCCGCGATCAATGGAATTGGGCTAG
EST: GAAATTGTTTATGCATCAACAGAGAAAGCGGAAAGAGAACTTAATTGGAA GACTAAATATAGCATCGATGATATGTGCEST: gi|261497131|gb|GT185199.1|GT185199
genomic: GAAATTGTTTATGCATCAACAGAGAAAGCGGAAAGAGAACTTAATTGGAAgtaagtatta ... cgccgtgcagGACTAAATATAGCATCGATGATATGTGC
EST: GAAATTGTTTATGCATCAACAGAGAAAGCGGAAAGAGAACTTAATTGGAA GACTAAATATAGCATCGATGATATGTGCCGCGATCAATGGAATTGGGC
genomic: GAAATTGTTTATGCATCAACAGAGAAAGCGGAAAGAGAACTTAATTGGAAgtaagtatta ... cgccgtgcagGACTAAATATAGCATCGATGATATGTGCCGCGATCAATGGAATTGGGC
aattgttatttccgctccctttttctttttttctcacaaatttatcgccgtgcagGACTAAATATAGCATCGATGATATGTGCCGCGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGTGCATCTGCAGATTCCTCCAATTGATGT
ttctcac putative branch site (score: 2)
tttttctttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttttcgtcttctgataaataaaaaaatgggcaaggtttctctaattgttatttccgctccctttttctttttttctcacaaatttatcgccgtgcagGACTAAATATAGCATCGATGATATGTGCCGCGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGTGCATCTGCAGATTCCTCCAATTGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - -tcttctg
- - - - - - - - - - - aaaaaaa