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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatctcttttctgtccattatcaatatcatggatagcagctcttgcattagcaccatgaacttgtaaaatggtttaatgcatgttgtctctggcttaatagGTTATTGATAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAG

Basic information

species Glycine max
transcript GLYMA05G36050.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36050.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 3'ss of exon 6
gtacatctcttttctgtccattatcaatatcatggatagcagctcttgcattagcaccatgaacttgtaaaatggtttaatgcatgttgtctctggcttaatagGTTATTGATAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAG
               || | || |   |  ||      ||| | ||||  || | |   |   | ||  ||  | |   ||  ||||||  | ||  |  | |||| || || |||||||| || |||||||| || || |||||||||||  | || || ||||| || |||||||||||||| ||||  || |||||||| |
---------------gtactttcttctttcca------gca-cacttgagtttggattttcttcatgctaatcgctaagattgatgttgaat-tgtttgcacagGTGATCGACAAGTCCTTTGGTTTTGACACTGCGGTGGAGGAGGCTCAGAGGGCCATCAATGCTGCTCATGTTGAGGCTGAGAGTGCAGAGAATGGCATTG

upper sequence: GLYMA05G36050.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM5G816636_T02 (Zea mays), 3'ss of exon 8
gtacatctcttttctgtccattatcaatatcatggatagcagctcttgcattagcac----catgaacttgtaaa----atggtttaatgcatgttgtctctggcttaatagGTTATTGATAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAG
|||      || ||      |||   ||||  |||     |          |  ||     ||||| |   | ||     ||        |    |||  |     |   |||| ||||| ||||| || || || |||||||| |||||||||||||||||||| |||||||| || ||||| || |||| ||||| ||| ||||| ||||
gtaatatgtttctccacattttagtgatattttggtggaaaaaatggaagatgacatttgacatgatcacatgaaccttgtgtgcacgaactcactgttacccatgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTTGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAAGCTGTAAGTGCTGAGAATGGTATAG

upper sequence: GLYMA05G36050.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G443985_T03 (Zea mays), 3'ss of exon 8
---gtacatctcttttctgtccattatcaatatc--------atggatagcagctcttgcattagcaccatgaacttgtaaaatggttta-atgcat--gttgtctctggcttaatagGTTATTGATAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAG
    ||  | |||   |  |  | |  || | |         |||||      |  |||   |     |||||||    ||     | |   || ||     ||  |     |   |||| ||||| ||||| || || || |||||||| || ||||||||||||||||| |||||||| || ||||| ||||||| ||||| ||| ||||| ||||
gtaatatgtttctccacattttagtgacatttttgtgtaaaaatggaagatgccatttgacatgatcacatgaacaacgaaccccatatgcgtgaattcaccgttacccatgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAGGCTGTAAGTGCTGAGAATGGTATAG

upper sequence: GLYMA05G36050.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
------------------------------------------------gtacatctctttt-ctgtccattatcaatatcatggatagcagctcttgcattagcaccatgaacttgtaaaatggtttaatgcatgttgtctctggctta-------atagGTTATTGATAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAG
                                                 |||| ||  |||  ||   |     ||  |||   | |     | |   |||      ||  ||   |    |  ||   ||  | ||  ||| | ||         | |||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||  ||||||||   || ||| | || |
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctatt--ttttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagcaccatgaacttgtaaaatggtttaatgcatgttgtctctggcttaatagGTTATTGATAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAG
                         gtttaat  putative branch site (score: 4)
                  taaaatggtttaat  TA-rich tract