1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagcactctattttaggggaggtggtggtgttagtttccatgttttcaaactaattatgcctcttccatctgcatttgggaaattccagCTTAGTGGCGTAATGAAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTACGACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATC
species | Glycine max |
transcript | GLYMA05G35260.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTCTTTGGTTGCCTCTGCAGTGGGGAATAATGACGGCGAACTATCCACG CTTAGTGGCATAATGAAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTAEST: gi|14011245|gb|BG726167.1|BG726167
genomic: TCTCTTTGGTTGCCTCTGCAGTGGGGAATAATGACGGCGAACTATCCACGgtaagcactc ... gaaattccagCTTAGTGGCGTAATGAAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTA
EST: TCTCTTTGGTTGCCTCTGCAGTGGGGAATAATGACGGCGAACTATCCACG CTTAGTGGCGTAATGAAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTAEST: gi|21887556|gb|BQ740769.1|BQ740769
genomic: TCTCTTTGGTTGCCTCTGCAGTGGGGAATAATGACGGCGAACTATCCACGgtaagcactc ... gaaattccagCTTAGTGGCGTAATGAAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTA
EST: TCTCTTTGGTTGCCTCTGCAGTGGGGAATAATGACGGCGAACTATCCACG CTTAGTGGCGTAATGAAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTAEST: gi|11689043|gb|BF596719.1|BF596719
genomic: TCTCTTTGGTTGCCTCTGCAGTGGGGAATAATGACGGCGAACTATCCACGgtaagcactc ... gaaattccagCTTAGTGGCGTAATGAAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTA
EST: TCTCTTTGGTTGCCTCTGCAGTGGGGAATAATGACGGCGAACTATCCACG CTTAGTGGCGTAATGAAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTA
genomic: TCTCTTTGGTTGCCTCTGCAGTGGGGAATAATGACGGCGAACTATCCACGgtaagcactc ... gaaattccagCTTAGTGGCGTAATGAAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTA
tttccatgttttcaaactaattatgcctcttccatctgcatttgggaaattccagCTTAGTGGCGTAATGAAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTACGACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATC
aactaat putative branch site (score: 2)
ttttcaaactaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcactctattttaggggaggtggtggtgttagtttccatgttttcaaactaattatgcctcttccatctgcatttgggaaattccagCTTAGTGGCGTAATGAAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTACGACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG