1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caaaattcctaatggctaattttcttttctgtattccgcatgtcatctaagaactctaacatgttattggttgtcaattctatattatctttttgcgtagTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTA
species | Glycine max |
transcript | GLYMA05G33980.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCCAGGAGTATCTTCGTGGTGGAGATCAAACTAGCTTCATGTATCCAAG TGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGG
genomic: CTCCAGGAGTATCTTCGTGGTGGAGATCAAACTAGCTTCATGTATCCAAGgtaatacata ... ttttgcgtagTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGG
tctaagaactctaacatgttattggttgtcaattctatattatctttttgcgtagTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTA
ctctaac putative branch site (score: 2)
ttatcttttt putative PPT
tcaattctatattatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaattcctaatggctaattttcttttctgtattccgcatgtcatctaagaactctaacatgttattggttgtcaattctatattatctttttgcgtagTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - ctaatgg
- - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - -gcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtta