Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgacatagtcaatttaatcgacttatttgatattgtgacctaggagaggttttctaaagttattcatttgtttttttatttttattgtccgtttagTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACTGTATATCAGTTCTTCGA

Basic information

species Glycine max
transcript GLYMA05G33520.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33520.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 8
gttgacatagtcaatttaatcgacttatttgatattgtgacctaggagaggttttctaaagttattcatttgtttttttatttttattgtccgtttagTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACTGTATATCAGTTCTTCGA
                  ||   | |  |||| ||| |   |||   |     | ||    | ||   |||  |    | | || ||| ||     ||||||||||||| ||||| || |||||||| |||||||||||| | || ||||||||    || ||||||||||| ||||| || ||  | 
----------------gtatatgcatgattga-attatatactaattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacagTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggagaggttttctaaagttattcatttgtttttttatttttattgtccgtttagTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACTGTATATCAGTTCTTCGA
          ttctaaa  putative branch site (score: 2)
                                              tccgttt  putative PPT
        ttttctaaagttattc  TA-rich tract