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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatcctaacttttatctcacgtattccaagtcatgttcattttcttaggatttccttgtcatttggtgtgcctgttatatgttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGGCCTCTGGGAAA

Basic information

species Glycine max
transcript GLYMA05G32030.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32030.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G013750_T03 (Zea mays), 3'ss of exon 8
------gtatgttatcctaacttttatctcacgtattccaagtcatgttcattttcttaggatttccttgtcatttggtgtgcctgttatatgttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGG--CCTCTGGGAAA
       |   |  |   ||  |  ||||||   | |||| |    | | || |   ||  ||  | || |    || ||||  ||| |  ||  |     |||||| |  |||| |||||||||||||||||||| ||||| |||||  |  | |||||    | ||||   || ||||| || ||||||   |  || |||  
gtacagttgaatgtttgcaaaatggatctcata-actccaggctg-gcttatctcaata--atcactttttttcctgttgtga-tgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA--

upper sequence: GLYMA05G32030.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0031g01970.t01 (Vitis vinifera), 3'ss of exon 8
----------------------gtatgttatcctaacttttatctcacgtattccaagtcatgttcattttcttaggatttccttgtcatttggtgtgcctgtta----tatgttgtgcc----tagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGGCC---TCTGGGAAA
                      | || |  |      ||||     || | |      |  | | |||| | |||   ||   |  |  |||  | |   | |||    | ||||||        ||||| ||  |||||||| |||| ||||||||||||||||||||||  | ||| ||| |||  | ||||  ||| ||||| || ||||||  |     ||||   
gcatgtctcttgtgctttttgtgcatctcctgtgggtttttcatctacatttaatttattctatacattcttttattgttatttgattctttttttttttttttaatcatttgttgtattatcacagGTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCTTTGGAATATGTTTAAGGATGAATTTGAAAACGAGAAGAACATGCTTGGG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789644|gb|BG652235.1|BG652235
EST:     CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAA                         GTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
genomic: CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAAgtatgttatc ... ttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
EST: gi|19053473|gb|BM732140.1|BM732140
EST:     CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAA                         GTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
genomic: CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAAgtatgttatc ... ttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
EST: gi|37994245|gb|CF805991.1|CF805991
EST:     CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAA                         GTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
genomic: CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAAgtatgttatc ... ttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
EST: gi|254341094|gb|GR854822.1|GR854822
EST:     CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAA                         GTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
genomic: CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAAgtatgttatc ... ttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
EST: gi|18734862|gb|BM528428.1|BM528428
EST:     CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAA                         GTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
genomic: CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAAgtatgttatc ... ttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
EST: gi|22524861|gb|BU083672.1|BU083672
EST:     CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAA                         GTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
genomic: CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAAgtatgttatc ... ttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
EST: gi|17400997|gb|BM177779.1|BM177779
EST:     CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAA                         GTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
genomic: CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAAgtatgttatc ... ttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
EST: gi|9564218|gb|BE473727.1|BE473727
EST:     CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAA                         GTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
genomic: CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAAgtatgttatc ... ttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
EST: gi|11412649|gb|BF424660.1|BF424660
EST:     CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAA                         GTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
genomic: CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAAgtatgttatc ... ttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCT
EST: gi|17022950|gb|BM093984.1|BM093984
EST:     CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAA                         GTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATG
genomic: CTCAATTCCACCTTGGAGGATAAGAATATATCTGAGATTCCAAACTTCAAgtatgttatc ... ttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattttcttaggatttccttgtcatttggtgtgcctgttatatgttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGGCCTCTGGGAAA
                                      ttatatgtt  TA-rich tract