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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaactgttaaagaatttttatttttttttggcaggggtacaatattttcccatctttaatgagctgattccaccattctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG

Basic information

species Glycine max
transcript GLYMA05G30850.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G162881_T01 (Zea mays), 3'ss of exon 3
gtaagtaactgttaaagaatttttatttttttttggcaggggtacaatattttcccatctttaatgagctgattccaccattctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG
               || | |   ||  ||| || |         | |||||||  |||   | |    |  |||     |  | | | ||||||||||||||| ||||||||  | || || ||| |  |||||||||||||||| |||||||||||||||
-------------gtaggagtgcaatcatttattag---------attattttcttatcgaaatttctgtttttcacatgtaatctgatatgcagGTTTGTTGAAATAATGGCAACTGTATTCTCAAGGGATGCATGGCGCTGTGTATGGCATATGATTCAG

upper sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G24570.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaagtaactgttaaagaatttttatttttttttggcaggggtacaatattttcccatctttaatgagctgattccaccattctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG
    |||  | | ||| ||  | | | |     |  || |  |   | || ||   | | ||| | |  |  ||    | ||    || |  ||| || || |||||||||||||| || || ||| || ||||||||||||| |||||||||||||| |||
----gtatgtttcaaaaaacgtctctatcaaact--caagtttcagacatatttaaaccattagtaacttcgttatgtctttaataaaaaaacagATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCATGGCGCTGCGTGTGGCATATGATCCAG

upper sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G26440.4 (Arabidopsis thaliana), 3'ss of exon 10
gtaagtaactgttaaagaatttttatttttttttggcaggggtacaa-tattttcccatctttaatgagctgattccaccattctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG---------------------------------
               |    | | |||| |      ||     | || ||||    |    || ||    | | |    ||   |     || ||||||| | ||||| ||||||||||| || ||  || | |||||||| |||||||||||||||||||||                                 
-------------gtatggatctcatttgtcaaaaccaatacaataagtattcatactctcttgatccattaagttttgcacggttccttat-cagGTTTATAGAGATTATGGCTCCAGTTTTCTCTAGAGAGGCATGGCGTTGTGTGTGGCATATGATTCAGAATGACTTGGTTCACGGTTGGGGTCTTGACTTT

upper sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G13000.2 (Arabidopsis thaliana), 3'ss of exon 10
gtaagtaactgttaaagaatttttatttttttttggcaggggtacaatattttcccatctttaatgagctgattccaccattctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG---------------------------------
            ||   | | |  | | ||  ||  ||     | |    | | |  |  |        ||||||||   |  | |  | | ||||||| | ||||| ||||||||||| || ||| || |||||||||| || ||||||||||||||||||                                 
-----------gtacgtagtctcaaatgttcatta-caaaaacatagatctatacagtactc------ttgattccat-gtaatatt-cttacagGTTTATAGAGATTATGGCTCCAGTATTCTCAAGAGATGCATGGCGTTGCGTGTGGCATATGATTCAGAACGATTTGGTTCACGGTTGGGGTCTTGATTTC

upper sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 5
gtaagtaactgttaaagaatttttatttttttttggcaggggtacaatattttcccatcttt----aatgagctgatt--ccaccattctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG
 | || |    |      ||||||  | ||  ||  ||    | ||   | |  | ||   |    ||  |  | |||      | || |  || |||||||||||||||||| |||||||| || |||||  || |||||||||| ||||||||||||||| |||||
ttgagcagtactgttgttattttttctgttcattcccactcctgcatggtctgacaatggattagaaacaaaattattagttttccttttccaa-atgcagGTTTGTTGAGATCATGGCTCCTGTATTTTCTAGAGATGCATGGCGGTGTGTGTGGCATATGCTTCAG

upper sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 1
------------gtaagtaactgttaaagaatttttatttttttttggcaggggtacaatattttcccatcttt----aatgagctgatt--ccaccattctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG
             | || ||   |      ||||||  | ||  ||  ||    | ||   | |  | ||   |    ||  |  | |||      | || |  || |||||||||||||||||| |||||||| || |||||  || |||||||||| ||||||||||||||| |||||
gtatgaaaagctttgagcaatactattgttattttttctgttcattcccactcctgcatggtctgacaatggattagaaacaaaattattagttttccttttccaa-atgcagGTTTGTTGAGATCATGGCTCCTGTATTTTCTAGAGATGCATGGCGGTGTGTGTGGCATATGCTTCAG

upper sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 10
--gtaagtaactgttaa-agaatttttatttttttttggcaggggtacaatattttcccatctt--taatgagctgattccaccatt------------ctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG
   | |  | || | |  || | | || || |||||||       | | |    | |      |   ||||   |     ||  |||             |   | |||||||||||||||||| |||||||| || |||||  || |||||||||| ||||||||||||||| |||||
gtatgaaaagctttgagcagtactattgttattttttgtgttcattcccactcctgcatggtctgacaatggattagaaacaaaattattagtttttcttttccaaatgcagGTTTGTTGAGATCATGGCTCCTGTATTTTCTAGAGATGCATGGCGGTGTGTGTGGCATATGCTTCAG

upper sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S129_53V6.1 (Physcomitrella patens), 3'ss of exon 10
-------------------gtaagtaactgttaaagaatttttatttttttttggcaggggtacaatattttcccatctttaatgagctgattccaccattctgtaaca-tgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG
                    ||  ||    ||   |  ||    |  |  |||||  |  | |   || | ||   |  ||  || |   |||      || | ||| | ||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||  | ||| | || || |||
gtaataagtcaacctgtatttagttagtgattcgtgtcttaccttcctcctttggtcgttgaaatttactgtctgttagttgttgggt--atttacttcttgtttaatactgcagATTTGTTGAGATCATGGCTCCTGTGTTTTCACGAAAAGCATGGCGTTGCATCTGGTACATAATACAG

upper sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S448_20V6.3 (Physcomitrella patens), 3'ss of exon 10
gtaagtaactgttaaagaat---ttttatttttttttggcaggggtacaatattttcccatcttta-atgagctgatt--ccacc-----attctgtaacat-gcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG
|||| || |    ||| ||    |  | |  |   ||   | |    |    ||||   |  ||   |   | |  ||   |||      ||| |   | || |||||||||||||||| ||||| || |||||||||||||| |||||||| || || ||| | || || |||
gtaactagccaccaaacaaagcatcatgtgatgggttcataagatggcttccttttttgagattcgtactcgtttgttggtcactgacggattgttcgatatcgcagGTTTGTTGAGATCATGGCACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAG

upper sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
lower sequence: EFJ04271 (Selaginella moellendorffii), 3'ss of exon 5
gtaagtaactgttaaagaatttttatttttttttggcaggggtacaatattttcccatctttaatgagctgattccacc-attctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG---------------------------------
                 || |||| | |||  ||   |         ||| ||||   |||     ||||  ||| | | | |  ||    | ||| ||||| ||||| ||||||||||| ||||| || || || ||||||||||||||||||||||||||                                  
---------------gtaagttttgtgtttagtttctatt-------tatcttccttgcttc---tagctatttctatcgactgagtttgctacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT

upper sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
lower sequence: EFJ32148 (Selaginella moellendorffii), 3'ss of exon 6
gtaagtaactgttaaagaatttttatttttttttggcaggggtacaatattttcccatctttaatgagctgattccacc-attctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG---------------------------------
                         |   ||||  |    | | | || | |   |||   |  | ||||  ||| | | | |  ||    | ||| ||||| ||||| ||||||||||| ||||| || || || ||||||||||||||||||||||||||                                  
------------------------gtaagttttgtgtttagtttctatttatcttcattgcttct-agctatttctatcgactgagtttgctacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtacaatattttcccatctttaatgagctgattccaccattctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG
                                          ctgtaac  putative branch site (score: 3)
     aatatttt  TA-rich tract