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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttttatatattatttacatcatatgcataaagtgccaattggtatatgttttagtctaacaactttaatttgttacagGCATGGGCTAGACTTTGCAAATGTCTGGGACAAGATTTTCTTCCTTACATGGAGTTTGTCATGCCTCCACTGCTTCAATCTGCTTCACTTAAGCCTGATG

Basic information

species Glycine max
transcript GLYMA05G28950.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28950.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os07g38760.1 (Oryza sativa), 3'ss of exon 6
gtatgctttttatatattatttac--atcatatgcataaagtgccaattggtatatgttttagtctaacaactttaatttgttacagGCATGGGCTAGACTTTGCAAATGTCTGGGACAAGATTTTCTTCCTTACATGGAGTTTGTCATGCCTCCACTGCTTCAATCTGCTTCACTTAAGCCTGATG
|||  | |   |  ||||||  |   ||||||   ||||| | |  ||   |   |||   | | |  |  |||||   ||| |||||| ||||| ||  | ||||||||||| || || ||||||||||| |||||| |  |||| ||||| ||||||||||| ||||||  ||| ||||||||||
gtacacataaaacctattatgaattaatcata---ataaaattcagatcctt---tgtaacattttctc--cttta---tgtgacagGCTTGGGCCAGGTTATGCAAATGTCTCGGGCAGGATTTTCTTCCGTACATGAACGTTGTTATGCCACCACTGCTTCAGTCTGCTCAACTGAAGCCTGATG

upper sequence: GLYMA05G28950.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM5G887631_T01 (Zea mays), 3'ss of exon 6
gtatgctttttatatattatttacatcatatgcataaagtgccaattggtatatgttttagtctaaca---actttaatttgttacagGCATGGGCTAGACTTTGCAAATGTCTGGGACAAGATTTTCTTCCTTACATGGAGTTTGTCATGCCTCCACTGCTTCAATCTGCTTCACTTAAGCCTGATG
              |||  || | | ||     ||  |||   ||     |  |   | | |||||||   |  |  |  ||||| |||| |||||||| || ||||||||||| ||||| ||||| ||||||||||||    |||| ||||||||||||||||| ||||||  ||| ||||||||||
-------------gtatgcttcaaagcaatgaaatctagtcttaaa-aacaccttaatcattctaacacttatctccacatgttatagGCTTGGGCTAGGCTATGCAAATGTCTTGGACAGGATTTCCTTCCTTACATGAGTGTTGTTATGCCTCCACTGCTTCAGTCTGCTCAACTCAAGCCTGATG

upper sequence: GLYMA05G28950.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G19820.1 (Arabidopsis thaliana), 3'ss of exon 6
--gtatgctttttatatatta--tttacatcatatgcataaagtgccaattggtatatgttttagtctaa--caactttaatttgttacagGCATGGGCTAGACTTTGCAAATGTCTGGGACAAGATTTTCTTCCTTACATGGAGTTTGTCATGCCTCCACTGCTTCAATCTGCTTCACTTAAGCCTGATG
  |  | | |   | ||  ||  | ||  |  |||  |||||      |  ||||  |    | |  ||     || |||   | |   ||||||||||||| |||||||| ||||| || |||||||| || || |||||| || |||| ||||||||  ||||||| || |||  ||||||||| ||||
gtgatttcctacaacatgctaggtctatctgttatttataaa-catagagaggtaagttcgcttgcttacatttaccttacactctcgtagGCATGGGCTAGGCTTTGCAAGTGTCTAGGTCAAGATTTCCTCCCATACATGAAGGTTGTGATGCCTCCTTTGCTTCAGTCAGCTCAACTTAAGCCAGATG

upper sequence: GLYMA05G28950.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g00500.t01 (Vitis vinifera), 3'ss of exon 6
gtatgcttttta--tatattatttacatcatatgcataaagtgccaattggtatatgttttagtctaacaact--ttaatt--tgttacagGCATGGGCTAGACTTTGCAAATGTCTGGGACAAGATTTTCTTCCTTACATGGAGTTTGTCATGCCTCCACTGCTTCAATCTGCTTCACTTAAGCCTGATG
|||||||| | |  |||| | | |  ||||  |  |||   | ||| ||| |  |  | || || | |  | |  ||||||  || | ||||| ||||| ||||| ||||| || ||||||||||| || || |||||||||    |||||||||| ||  ||||||||||||||  |||||| |||||||
gtatgcttgtgaattataatgtgtggatcacttttatatctt-ccacttgtttcacttctttgtgtgatgaatatttaattattgctgcagGCTTGGGCCAGACTCTGCAAGTGCCTGGGACAAGACTTCCTCCCTTACATGAGTGTTGTCATGCCCCCTTTGCTTCAATCTGCTCAACTTAAACCTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcataaagtgccaattggtatatgttttagtctaacaactttaatttgttacagGCATGGGCTAGACTTTGCAAATGTCTGGGACAAGATTTTCTTCCTTACATGGAGTTTGTCATGCCTCCACTGCTTCAATCTGCTTCACTTAAGCCTGATG
                                 taacaactttaattt  TA-rich tract