1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gacaattttaagtttttatcaacaatatattttgctattagattgcttttccaagttgtttttttcataatggtgatctactttgcacttaactctgcagGAAACTCTTCTTCGGGTATGCTGTGCAATGCTTGTTCTCGTTCGTAAGCGCCTCCTTGCGGGTGATTTCACTTCTAATCTCAAGTTGCTGCAAAATTATC
species | Glycine max |
transcript | GLYMA05G28660.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACAGCCTTCACATTTGGGATACTCTTTTAAGCGATCCAGATGGTCCACAG GAAACTCTTCTTCGGGTATGCTGTGCAATGCTTGTTCTCGTTCGTAAGCGCEST: gi|6725878|gb|AW310277.1|AW310277
genomic: ACAGCCTTCACATTTGGGATACTCTTTTAAGCGATCCAGATGGTCCACAGgtacaaatgt ... aactctgcagGAAACTCTTCTTCGGGTATGCTGTGCAATGCTTGTTCTCGTTCGTAAGCGC
EST: ACAGCCTTCACATTTGGGATACTCTTTTAAGCGATCCAGATGGTCCACAG GAAACTCTTCTTCGGGTATGCTGTGCAATGCTTGTTCTCGTTCGTAAGCGCEST: gi|58016472|gb|CX703214.1|CX703214
genomic: ACAGCCTTCACATTTGGGATACTCTTTTAAGCGATCCAGATGGTCCACAGgtacaaatgt ... aactctgcagGAAACTCTTCTTCGGGTATGCTGTGCAATGCTTGTTCTCGTTCGTAAGCGC
EST: ACAGCCTTCACATTTGGGATACTCTTTTAAGCGATCCAGATGGTCCACAG GAAACTCTTCTTCGGGTATGCTGTGCAATGCTTGTTCTCGTTCGTAAGCGC
genomic: ACAGCCTTCACATTTGGGATACTCTTTTAAGCGATCCAGATGGTCCACAGgtacaaatgt ... aactctgcagGAAACTCTTCTTCGGGTATGCTGTGCAATGCTTGTTCTCGTTCGTAAGCGC
cttttccaagttgtttttttcataatggtgatctactttgcacttaactctgcagGAAACTCTTCTTCGGGTATGCTGTGCAATGCTTGTTCTCGTTCGTAAGCGCCTCCTTGCGGGTGATTTCACTTCTAATCTCAAGTTGCTGCAAAATTATC
acttaac putative branch site (score: 3)
ttgtttttttcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacaattttaagtttttatcaacaatatattttgctattagattgcttttccaagttgtttttttcataatggtgatctactttgcacttaactctgcagGAAACTCTTCTTCGGGTATGCTGTGCAATGCTTGTTCTCGTTCGTAAGCGCCTCCTTGCGGGTGATTTCACTTCTAATCTCAAGTTGCTGCAAAATTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - -atcaaca
- - - - - - - - - - - - - - - - tgctatt
- - - - - - - - - - - - - - - - - - - - - - - - ttccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactt