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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcctataaattccaaaagatcttatttacgttacttggttactgacggtcatgttgtgataagaatgaactaacaatagctgttctttttatcttggtaacagGCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAGCAAACTAAGGCATTGAAAATCACATGCAATCTCAACAATGCAGCCTGTA

Basic information

species Glycine max
transcript GLYMA05G28260.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270890|gb|BM887146.1|BM887146
EST:     CCTTTTTTAAGGTTGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAG                         GCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
genomic: CCTTTTTTAAGGTTGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAGgtattcctat ... ttggtaacagGCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
EST: gi|57574566|gb|CX547541.1|CX547541
EST:     CCTTTTTTAAGGTTGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAG                         GCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
genomic: CCTTTTTTAAGGTTGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAGgtattcctat ... ttggtaacagGCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
EST: gi|9987554|gb|BE661662.1|BE661662
EST:     CCTTTTTTAAGGTTGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAG                         GCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGANGAGAAACCG
genomic: CCTTTTTTAAGGTTGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAGgtattcctat ... ttggtaacagGCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
EST: gi|58023136|gb|CX709877.1|CX709877
EST:     CCTTTTTTAAGGTGGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAG                         GCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
genomic: CCTTTTTTAAGGTTGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAGgtattcctat ... ttggtaacagGCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
EST: gi|58022830|gb|CX709571.1|CX709571
EST:     CAAATATGAAAGGGCTTCAAAGAGGTATGAAAAG                         GCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
genomic: CAAATATGAAAGGGCTTCAAAGAGATATGAAAAGgtattcctat ... ttggtaacagGCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
EST: gi|58019828|gb|CX706570.1|CX706570
EST:     CCTTTTTNAAGGTTGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAG                         GCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
genomic: CCTTTTTTAAGGTTGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAGgtattcctat ... ttggtaacagGCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
EST: gi|6455054|gb|AW185737.1|AW185737
EST:     AAATATGAAAGGGCTTCAAAGAGATATGAAAAG                         GCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
genomic: AAATATGAAAGGGCTTCAAAGAGATATGAAAAGgtattcctat ... ttggtaacagGCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
EST: gi|51334753|gb|CO978619.1|CO978619
EST:     CCTTTTTTAAGGTTGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAG                         GCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG
genomic: CCTTTTTTAAGGTTGGCAAATATGAAAGGGCTTCAAAGAGATATGAAAAGgtattcctat ... ttggtaacagGCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgttgtgataagaatgaactaacaatagctgttctttttatcttggtaacagGCCATAAAGTTTGTCGAGTATGATTCCTCCTTTAGTGATGAGGAGAAACAGCAAACTAAGGCATTGAAAATCACATGCAATCTCAACAATGCAGCCTGTA
                   aactaac  putative branch site (score: 1)
                               ctgttctttttatctt  putative PPT
                                  ttctttttat  TA-rich tract