1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttattttggtatatgctttgaacatcttgttgagagctggtaatgaaatgattgtttactaatgggttttaatcaatattatgggggattgttctgcagCTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTTATATGATTCAGTTTCTGGATGTGGTTTTTCAATTAAGCGAAAGAGATCG
species | Glycine max |
transcript | GLYMA05G26640.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACG CTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTTEST: gi|17021394|gb|BM092428.1|BM092428
genomic: ACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACGgtatgactat ... tgttctgcagCTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTT
EST: ACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACG CTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTTEST: gi|208163611|gb|GD963223.1|GD963223
genomic: ACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACGgtatgactat ... tgttctgcagCTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTT
EST: ACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACG CTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTTEST: gi|192320859|gb|FK013053.1|FK013053
genomic: ACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACGgtatgactat ... tgttctgcagCTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTT
EST: ACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACG CTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTTEST: gi|208328387|gb|GE129657.1|GE129657
genomic: ACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACGgtatgactat ... tgttctgcagCTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTT
EST: ACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACG CTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTT
genomic: ACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACGgtatgactat ... tgttctgcagCTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTT
gaaatgattgtttactaatgggttttaatcaatattatgggggattgttctgcagCTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTTATATGATTCAGTTTCTGGATGTGGTTTTTCAATTAAGCGAAAGAGATCG
ttgttct CT-rich tract
ttttaatcaatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattttggtatatgctttgaacatcttgttgagagctggtaatgaaatgattgtttactaatgggttttaatcaatattatgggggattgttctgcagCTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTTATATGATTCAGTTTCTGGATGTGGTTTTTCAATTAAGCGAAAGAGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - tatatgc
- - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - gctggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggat