1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcttacttcatacactttataatataatttattattagtagtagtagtagtattttgtttgatggtttgttcattcctttttaagtttcctaatattcttcctttttatttcctgcttattaatttttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACACATGGAAGGGATGTGCACGGGGAGAGTGAAACACTGAGGATGCTAAGTC
species | Glycine max |
transcript | GLYMA05G18170.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAG CTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACAEST: gi|22525794|gb|BU084605.1|BU084605
genomic: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGgttcttactt ... ttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
EST: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAG CTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACEST: gi|208334667|gb|GE128804.1|GE128804
genomic: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGgttcttactt ... ttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGAC
EST: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAG CTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACAEST: gi|207820322|gb|GD792118.1|GD792118
genomic: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGgttcttactt ... ttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
EST: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAG CTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACAEST: gi|16280595|gb|BI944044.1|BI944044
genomic: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGgttcttactt ... ttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
EST: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAG CTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
genomic: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGgttcttactt ... ttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
taagtttcctaatattcttcctttttatttcctgcttattaatttttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACACATGGAAGGGATGTGCACGGGGAGAGTGAAACACTGAGGATGCTAAGTC
tattaat putative branch site (score: 2)
ttcttcctttttattt CT-rich tract
taatattcttcctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttacttcatacactttataatataatttattattagtagtagtagtagtattttgtttgatggtttgttcattcctttttaagtttcctaatattcttcctttttatttcctgcttattaatttttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACACATGGAAGGGATGTGCACGGGGAGAGTGAAACACTGAGGATGCTAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG