1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaatacaaccgttgtgccacttttatatttgtcaaaccatgctatttatttggtattaaaattttcttttgtttgcagGACAAACCACATACTCCAAGTAGGCAATCTGAAAATAGTTATGATCAGTTGTCAACCCCCTGTGCAAAGATTGCAAAGGGTAAAGCTGCTGAGAGGCGAG
species | Glycine max |
transcript | GLYMA05G10050.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGATGTTTTATCTTCCACCCAGCTGTATAATGAAACAAGCTTCATG GACAAACCACATACTCCAAGTAGGCAATCTGAAAATAGTTATGATCAGTTGEST: gi|37995370|gb|CF806959.1|CF806959
genomic: TGCTGGATGTTTTATCTTCCACCCAGCTGTATAATGAAACAAGCTTCATGgtaaatacaa ... ttgtttgcagGACAAACCACATACTCCAAGTAGGCAATCTGAAAATAGTTATGATCAGTTG
EST: TGCTGGATGTTTTATCTTCCACCCAGCTGTATAATGAAACAAGCTTCATG GACAAACCACATACTCCAAGTAGGCAATCTGAAAATAGTTATGATCAGTTGEST: gi|9898637|gb|BE607605.1|BE607605
genomic: TGCTGGATGTTTTATCTTCCACCCAGCTGTATAATGAAACAAGCTTCATGgtaaatacaa ... ttgtttgcagGACAAACCACATACTCCAAGTAGGCAATCTGAAAATAGTTATGATCAGTTG
EST: TGCTGGATGTTTTATCTTCCACCCAGCTGTATAATGAAACAAGCTTCATG GACAAACCACATACTCCAAGTAGGCAATCTGAAAATAGTTATGATCAGTTG
genomic: TGCTGGATGTTTTATCTTCCACCCAGCTGTATAATGAAACAAGCTTCATGgtaaatacaa ... ttgtttgcagGACAAACCACATACTCCAAGTAGGCAATCTGAAAATAGTTATGATCAGTTG
tatatttgtcaaaccatgctatttatttggtattaaaattttcttttgtttgcagGACAAACCACATACTCCAAGTAGGCAATCTGAAAATAGTTATGATCAGTTGTCAACCCCCTGTGCAAAGATTGCAAAGGGTAAAGCTGCTGAGAGGCGAG
ttttcttttgtttgc CT-rich tract
tatttatttggtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatacaaccgttgtgccacttttatatttgtcaaaccatgctatttatttggtattaaaattttcttttgtttgcagGACAAACCACATACTCCAAGTAGGCAATCTGAAAATAGTTATGATCAGTTGTCAACCCCCTGTGCAAAGATTGCAAAGGGTAAAGCTGCTGAGAGGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG