1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acacctttctgtttcatgaagtcaggtatatccgatgctctattttgtatatttactagtggtaatgcaactgaatttaagctcatggatgtaatggaagCTTAGCAGAGATTGAGAAAGTATTTGAATTTGCAATCAAAGGCTCGGATGAAGAAAAGATATCTGCTGCTACCATTCTTTGTGGGGCATCTTTAGTACGT
species | Glycine max |
transcript | GLYMA05G09220.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCACTAACTCCTCCATTGGTTAATGTCTTAGTTGCAACTCCTGCTTCTAG CTTAGCAGAGATTGAGAAAATATTTGAATTTGCAATCAATGGCTCGGATGAEST: gi|208035598|gb|GD837300.1|GD837300
genomic: CCACTAACTCCTCCATTGGTTAATGTCTTAGTTGCAACTCCTGCTTCTAGgtatgctgct ... gtaatggaagCTTAGCAGAGATTGAGAAAGTATTTGAATTTGCAATCAAAGGCTCGGATGA
EST: CCACTAACTCCTCCATTGGTTAATGTCTTAGTTGCAACTCCTGCTTCTAG CTTAGCAGAGATTGAGAAAGTATTTGAATTTGCAATCAAAGGCTCGGATGA
genomic: CCACTAACTCCTCCATTGGTTAATGTCTTAGTTGCAACTCCTGCTTCTAGgtatgctgct ... gtaatggaagCTTAGCAGAGATTGAGAAAGTATTTGAATTTGCAATCAAAGGCTCGGATGA
tgtatatttactagtggtaatgcaactgaatttaagctcatggatgtaatggaagCTTAGCAGAGATTGAGAAAGTATTTGAATTTGCAATCAAAGGCTCGGATGAAGAAAAGATATCTGCTGCTACCATTCTTTGTGGGGCATCTTTAGTACGT
tgaatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacctttctgtttcatgaagtcaggtatatccgatgctctattttgtatatttactagtggtaatgcaactgaatttaagctcatggatgtaatggaagCTTAGCAGAGATTGAGAAAGTATTTGAATTTGCAATCAAAGGCTCGGATGAAGAAAAGATATCTGCTGCTACCATTCTTTGTGGGGCATCTTTAGTACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - ctttctg
- - - - - - ttcatga
- - - - - - - - - - - - - - - -ccgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggat