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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggcttgcatatgagggacaatgcttcttccggcattaactcctctataagtcccaaagaaaaccaatctcctggattttccttttttagGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCT

Basic information

species Glycine max
transcript GLYMA05G08750.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08750.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G14610.1 (Arabidopsis thaliana), 3'ss of exon 6
gtggcttgcatatgagggacaatgcttcttccg-gcattaactcctctataagtcccaaagaaaaccaatctcctggattttcctttt-ttagGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCT
            ||         ||| | |  |  || ||  |  |   |   || |     |||   || |||||| || |  ||||   ||||| | | ||| || |||||||| ||| |||||||||| || ||||||||||| |||||  | |||   ||||| ||||| |||||||||||||||||||
-----------gtgcttcttctggctccataagcacagtagatttttggtgtttctctgctgaaaaggatatcctggtttgttgttttgccagGTATACAGTGCAGGATTCTCAGCTCCATCTCCAATTCAAGCTCAGTCATGGCCAATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCT

upper sequence: GLYMA05G08750.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G14610.2 (Arabidopsis thaliana), 3'ss of exon 4
gtggcttgcatatgag-ggacaatgcttcttccggc-----------attaactcctctataagtcccaaagaaaaccaatctcctggattttcctttt-ttagGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCT
    | |||| | | | |||   ||||||||| |||           | ||  |  |   |   || |     |||   || |||||| || |  ||||   ||||| | | ||| || |||||||| ||| |||||||||| || ||||||||||| |||||  | |||   ||||| ||||| |||||||||||||||||||
----cctgcaaacgggaggatggtgcttcttctggctccataagcacagtagatttttggtgtttctctgctgaaaaggatatcctggtttgttgttttgccagGTATACAGTGCAGGATTCTCAGCTCCATCTCCAATTCAAGCTCAGTCATGGCCAATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCT

upper sequence: GLYMA05G08750.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G01540.3 (Arabidopsis thaliana), 3'ss of exon 4
gtggcttgcatatgagggacaatgcttcttccggcattaactcc---tctataagtcccaaagaaaaccaatctcctg------------------gattttcc--ttttttagGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCT
               ||||   ||||||||| | ||| | |  |   || ||||| || ||||||      | | |                    | |||||   ||| ||||||||  | ||| || ||||| || |||||||||||||| || |||||||||||||||||| | |||||||| || ||||| |||||||||||||| ||||
--------------ggggatggtgcttcttctgacatgagccaccattccataagcccaaaagaaccttggtgttccccttctcataggacagtgtggttttctgttttcttagGTACTCAGTGCAGGTTTCTCTGCTCCAACTCCAATTCAAGCTCAGTCATGGCCCATTGCTATGCAAGGTAGGGACATAGTAGCCATTGCTAAAACTGGCT

upper sequence: GLYMA05G08750.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv14s0066g01020.t01 (Vitis vinifera), 3'ss of exon 4
----------gtggcttgcatatgagggacaatgcttcttccggcattaactcctctata-agtcccaaagaaaaccaatctcctggattttccttttttagGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCT
           | || | |  || ||   |||        ||  |   || || |  | | ||| ||      |      || |||| |||| |||||  ||||| | | |||||||||||| ||||| |||||||||||||||||||| |||||  ||||||||||| || | |||||||| ||||||||||| || || |
tcttcttgcattagcct-cccataagtc-caaaaagaaaaccaactcgaaatcttggagacagtacctctcttacaggggctgctggtttttgcttttccagGTATACAGTGCTGGGTTCTCTGCCCCTACTCCAATTCAGGCACAGTCTTGGCCAGTTGCTCTTCAAAGTCGTGATATAGTGGCCATTGCTAAGACGGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaactcctctataagtcccaaagaaaaccaatctcctggattttccttttttagGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCT
 cattaac  putative branch site (score: 2)
                                tctcctggattttcct  putative PPT
                                        attttcctttttta  TA-rich tract